NCBI Taxonomy id Scientific name No of proteins No of proteins with annotation % of proteins with annotation 139 Borrelia burgdorferi 4262 3546 0.83 197 Campylobacter jejuni 3936 3141 0.80 340 Xanthomonas campestris pv. campestris 4260 3356 0.79 375 Bradyrhizobium japonicum 8994 6684 0.74 394 Sinorhizobium fredii NGR234 6433 5142 0.80 491 Neisseria meningitidis serogroup B 2083 1591 0.76 519 Bordetella parapertussis 4217 3743 0.89 520 Bordetella pertussis 3523 3119 0.89 536 Chromobacterium violaceum 4438 3467 0.78 542 Zymomonas mobilis 2024 1684 0.83 623 Shigella flexneri 5431 4724 0.87 632 Yersinia pestis 6138 4722 0.77 633 Yersinia pseudotuberculosis 4521 3800 0.84 666 Vibrio cholerae 5899 4770 0.81 670 Vibrio parahaemolyticus 5741 4448 0.77 672 Vibrio vulnificus 5084 4141 0.81 777 Coxiella burnetii 2117 1398 0.66 813 Chlamydia trachomatis 2713 2036 0.75 844 Wolinella succinogenes 2056 1672 0.81 882 Desulfovibrio vulgaris str. Hildenborough 3519 2455 0.70 883 Desulfovibrio vulgaris str. 'Miyazaki F' 3187 2537 0.80 915 Nitrosomonas europaea 2408 1984 0.82 1097 Chlorobaculum tepidum 2286 1620 0.71 1140 Synechococcus elongatus PCC 7942 2853 2165 0.76 1299 Deinococcus radiodurans 3102 2234 0.72 1309 Streptococcus mutans 2410 1996 0.83 1313 Streptococcus pneumoniae 6081 5263 0.87 1351 Enterococcus faecalis 4669 3210 0.69 1392 Bacillus anthracis 6823 4705 0.69 1423 Bacillus subtilis 5575 4415 0.79 1488 Clostridium acetobutylicum 3888 2959 0.76 1502 Clostridium perfringens 4197 3223 0.77 1513 Clostridium tetani 2425 1987 0.82 1639 Listeria monocytogenes 6658 5790 0.87 1642 Listeria innocua 3177 2591 0.82 1717 Corynebacterium diphtheriae 2338 1732 0.74 1718 Corynebacterium glutamicum 4531 3133 0.69 1765 Mycobacterium bovis 4008 3132 0.78 1769 Mycobacterium leprae 2327 1543 0.66 1770 Mycobacterium avium subsp. paratuberculosis 4492 3543 0.79 1773 Mycobacterium tuberculosis 6136 4412 0.72 1902 Streptomyces coelicolor 8227 5855 0.71 2336 Thermotoga maritima 1888 1597 0.85 2371 Xylella fastidiosa 3123 1966 0.63 2734 Symbiobacterium thermophilum 3315 2553 0.77 2880 Ectocarpus siliculosus 16429 9091 0.55 3055 Chlamydomonas reinhardtii 15107 8210 0.54 3067 Volvox carteri 14446 7680 0.53 3694 Populus trichocarpa 44193 30548 0.69 3702 Arabidopsis thaliana 55315 39882 0.72 3988 Ricinus communis 31454 19342 0.61 4558 Sorghum bicolor 33827 22682 0.67 5660 Leishmania braziliensis 8216 4282 0.52 5664 Leishmania major 8328 4357 0.52 5671 Leishmania infantum 8243 4341 0.53 5693 Trypanosoma cruzi 12520 5881 0.47 5722 Trichomonas vaginalis 50499 19908 0.39 5759 Entamoeba histolytica 8396 4688 0.56 5762 Naegleria gruberi 15732 8651 0.55 5786 Dictyostelium purpureum 12353 7317 0.59 5811 Toxoplasma gondii 19252 8835 0.46 5823 Plasmodium berghei ANKA 11662 3314 0.28 5825 Plasmodium chabaudi 14689 3675 0.25 5851 Plasmodium knowlesi strain H 5102 3044 0.60 5865 Babesia bovis 4124 2520 0.61 5874 Theileria annulata 4170 2501 0.60 5875 Theileria parva 4182 2286 0.55 5888 Paramecium tetraurelia 39936 18117 0.45 6183 Schistosoma mansoni 12686 7619 0.60 6238 Caenorhabditis briggsae 21792 12437 0.57 6239 Caenorhabditis elegans 24302 15990 0.66 6279 Brugia malayi 11559 6989 0.60 6334 Trichinella spiralis 16259 6942 0.43 6945 Ixodes scapularis 21118 11330 0.54 7070 Tribolium castaneum 17002 10741 0.63 7159 Aedes aegypti 16999 12588 0.74 7165 Anopheles gambiae 15863 12246 0.77 7176 Culex quinquefasciatus 19010 12713 0.67 7209 Loa loa 16308 7734 0.47 7217 Drosophila ananassae 15296 10301 0.67 7220 Drosophila erecta 15111 10017 0.66 7222 Drosophila grimshawi 14793 10087 0.68 7227 Drosophila melanogaster 36427 23498 0.65 7230 Drosophila mojavensis 14922 9918 0.66 7234 Drosophila persimilis 16859 10378 0.62 7238 Drosophila sechellia 16362 10451 0.64 7240 Drosophila simulans 18801 11906 0.63 7244 Drosophila virilis 14916 10176 0.68 7245 Drosophila yakuba 17248 11119 0.64 7260 Drosophila willistoni 15560 10215 0.66 7425 Nasonia vitripennis 306 161 0.53 7719 Ciona intestinalis 21006 14720 0.70 7739 Branchiostoma floridae 29216 20699 0.71 7955 Danio rerio 55536 45839 0.83 8364 Xenopus (Silurana) tropicalis 30546 26303 0.86 9031 Gallus gallus 27053 21270 0.79 9103 Meleagris gallopavo 16031 13404 0.84 9258 Ornithorhynchus anatinus 26916 21245 0.79 9305 Sarcophilus harrisii 22510 18213 0.81 9483 Callithrix jacchus 42151 33920 0.80 9541 Macaca fascicularis 24233 5258 0.22 9544 Macaca mulatta 51666 29941 0.58 9595 Gorilla gorilla gorilla 27367 21735 0.79 9598 Pan troglodytes 4408 3396 0.77 9606 Homo sapiens 117995 87549 0.74 9615 Canis lupus familiaris 28063 23312 0.83 9646 Ailuropoda melanoleuca 35659 29222 0.82 9785 Loxodonta africana 25787 21847 0.85 9796 Equus caballus 24031 20298 0.84 9823 Sus scrofa 26249 20882 0.80 9913 Bos taurus 33658 28002 0.83 9986 Oryctolagus cuniculus 25898 21924 0.85 10029 Cricetulus griseus 24421 15811 0.65 10090 Mus musculus 77140 56617 0.73 10116 Rattus norvegicus 41625 33778 0.81 10228 Trichoplax adhaerens 11585 8719 0.75 10243 Cowpox virus 2187 1979 0.90 10244 Monkeypox virus 619 565 0.91 10246 Vaccinia virus LC16MO 2 2 1.00 10247 Vaccinia virus WR 65-16 1 1 1.00 10248 Vaccinia virus LC16M8 2 2 1.00 10249 Vaccinia virus Copenhagen 258 176 0.68 10250 Vaccinia virus Dairen I 3 3 1.00 10251 Vaccinia virus IHD-J 2 2 1.00 10252 Vaccinia virus Lister 2 2 1.00 10253 Vaccinia virus Tian Tan 239 169 0.71 10254 Vaccinia virus WR 257 209 0.81 10259 Orf virus (strain NZ2) 7 6 0.86 10272 Rabbit fibroma virus (strain Kasza) 153 137 0.90 10280 Molluscum contagiosum virus subtype 1 261 166 0.64 10281 Molluscum contagiosum virus subtype 2 3 3 1.00 10298 Human herpesvirus 1 2875 2065 0.72 10299 Herpes simplex virus (type 1 / strain 17) 73 69 0.95 10300 Herpes simplex virus (type 1 / strain A44) 1 1 1.00 10301 Herpes simplex virus (type 1 / strain Angelotti) 3 3 1.00 10302 Herpes simplex virus (type 1 / strain CL101) 1 1 1.00 10303 Herpes simplex virus (type 1 / strain HFEM) 6 6 1.00 10304 Herpes simplex virus (type 1 / strain F) 15 12 0.80 10305 Herpes simplex virus (type 1 / strain HZT) 1 1 1.00 10306 Human herpesvirus 1 strain KOS 13 12 0.92 10307 Herpes simplex virus (type 1 / strain MP) 3 2 0.67 10308 Herpes simplex virus (type 1 / strain Patton) 2 2 1.00 10309 Herpes simplex virus (type 1 / strain SC16) 2 2 1.00 10310 Human herpesvirus 2 550 432 0.79 10312 Human herpesvirus 2 strain 186 1 1 1.00 10313 Human herpesvirus 2 strain 333 12 12 1.00 10314 Human herpesvirus 2 strain G 5 5 1.00 10315 Human herpesvirus 2 strain HG52 74 70 0.95 10316 Human herpesvirus 2 strain SA8 2 2 1.00 10323 Bovine herpesvirus type 1.1 (strain Cooper) 73 68 0.93 10325 Macacine herpesvirus 1 187 150 0.80 10333 Equine herpesvirus type 4 (strain 1942) 97 89 0.92 10338 Human herpesvirus 3 strain Dumas 69 65 0.94 10359 Human herpesvirus 5 4457 3092 0.69 10360 Human herpesvirus 5 strain AD169 198 102 0.52 10362 Human herpesvirus 5 strain Eisenhardt 1 0 0.00 10363 Human herpesvirus 5 strain Towne 182 115 0.63 10367 Murine cytomegalovirus (strain Smith) 15 14 0.93 10369 Human herpesvirus 6 (strain GS) 14 12 0.86 10370 Human herpesvirus 6 (strain Uganda-1102) 103 73 0.71 10376 Human herpesvirus 4 1771 1542 0.87 10377 Human herpesvirus 4 (strain B95-8) 117 75 0.64 10378 Human herpesvirus 4 (strain RAJI) 1 1 1.00 10383 Herpesvirus saimiri (strain 11) 75 66 0.88 10389 Marek's disease herpesvirus type 1 strain MD5 90 72 0.80 10406 Ground squirrel hepatitis virus 5 5 1.00 10409 Hepatitis B virus adr4 5 5 1.00 10410 Hepatitis B virus adw/991 5 5 1.00 10411 Hepatitis B virus alpha1 5 5 1.00 10412 Hepatitis B virus adw/Indonesia/PIDW420 5 5 1.00 10413 Hepatitis B virus adw/Japan/PJDW233 5 5 1.00 10414 Hepatitis B virus LSH/chimpanzee 7 7 1.00 10415 Hepatitis B virus adw/Okinawa/PODW282 5 5 1.00 10419 Hepatitis B virus subtype adyw 3 3 1.00 10421 Hepatitis delta virus (ISOLATE 7/18/83) 2 2 1.00 10422 Hepatitis delta virus (ISOLATE AMERICAN) 2 2 1.00 10423 Hepatitis delta virus (ISOLATE ITALIAN) 2 2 1.00 10424 Hepatitis delta virus (ISOLATE JAPANESE M-1) 2 2 1.00 10425 Hepatitis delta virus (ISOLATE JAPANESE M-2) 2 2 1.00 10426 Hepatitis delta virus (ISOLATE NAURU) 2 2 1.00 10427 Hepatitis delta virus (ISOLATE JAPANESE S-1) 2 2 1.00 10428 Hepatitis delta virus (ISOLATE JAPANESE S-2) 2 2 1.00 10430 Woodchuck hepatitis virus 1 5 5 1.00 10431 Woodchuck hepatitis virus 59 5 5 1.00 10432 Woodchuck hepatitis virus 7 5 5 1.00 10433 Woodchuck hepatitis virus 8 5 5 1.00 10439 Duck hepatitis B virus brown Shanghai duck/S5 4 4 1.00 10440 Duck hepatitis B virus white Shanghai duck/S31 4 4 1.00 10480 Thermoproteus tenax virus 1 (STRAIN KRA1) 37 2 0.05 10498 African swine fever virus BA71V 150 66 0.44 10500 African swine fever virus Malawi LIL 20/1 156 80 0.51 10506 Paramecium bursaria Chlorella virus 1 853 198 0.23 10515 Human adenovirus 2 353 337 0.95 10519 Human adenovirus 7 271 203 0.75 10522 Human adenovirus 35 61 54 0.89 10524 Human adenovirus 41 378 359 0.95 10527 Human adenovirus 9 65 59 0.91 10529 Human adenovirus 31 67 59 0.88 10533 Human adenovirus 1 143 137 0.96 10534 Human adenovirus 6 135 121 0.90 10553 Fowl adenovirus 1 88 41 0.47 10559 Bovine papillomavirus type 1 46 42 0.91 10560 Bovine papillomavirus type 2 38 33 0.87 10561 Bovine papillomavirus 3 9 5 0.56 10562 Bovine papillomavirus type 4 12 6 0.50 10564 Deer papillomavirus 9 7 0.78 10565 European elk papillomavirus 18 10 0.56 10570 Rhesus monkey papillomavirus 1 20 19 0.95 10573 Human papillomavirus type 13 18 18 1.00 10576 Pygmy chimpanzee papillomavirus type 1 8 8 1.00 10579 Human papillomavirus type 8 9 8 0.89 10580 Human papillomavirus type 11 100 91 0.91 10583 Human papillomavirus type 1a 8 6 0.75 10584 Human papillomavirus type 2a 7 7 1.00 10585 Human papillomavirus type 31 301 300 1.00 10586 Human papillomavirus type 33 133 132 0.99 10587 Human papillomavirus type 35 96 96 1.00 10588 Human papillomavirus type 39 54 54 1.00 10589 Human papillomavirus type 41 11 6 0.55 10590 Human papillomavirus type 42 40 39 0.97 10591 Human papillomavirus type 43 12 10 0.83 10592 Human papillomavirus type 44 9 8 0.89 10593 Human papillomavirus type 45 65 64 0.98 10594 Human papillomavirus type 47 8 6 0.75 10595 Human papillomavirus type 51 42 42 1.00 10596 Human papillomavirus type 56 91 91 1.00 10598 Human papillomavirus type 58 476 442 0.93 10599 Human papillomavirus type 5b 13 10 0.77 10600 Human papillomavirus type 6b 9 8 0.89 10601 Human papillomavirus type 6c 3 2 0.67 10602 Human papillomavirus type me180 4 4 1.00 10604 Human papillomavirus type 12 7 7 1.00 10605 Human papillomavirus type 14 7 7 1.00 10606 Human papillomavirus type 15 6 6 1.00 10607 Human papillomavirus type 17 6 6 1.00 10608 Human papillomavirus type 19 8 6 0.75 10609 Human papillomavirus type 25 9 7 0.78 10611 Human papillomavirus type 30 13 13 1.00 10614 Human papillomavirus type 3 9 9 1.00 10615 Human papillomavirus type 40 9 9 1.00 10616 Human papillomavirus type 49 8 8 1.00 10617 Human papillomavirus type 4 9 8 0.89 10618 Human papillomavirus type 52 261 260 1.00 10620 Human papillomavirus type 7 6 6 1.00 10621 Human papillomavirus type 9 7 7 1.00 10625 Budgerigar fledgling disease polyomavirus 154 136 0.88 10626 Hamster polyomavirus 10 10 1.00 10627 Bovine polyomavirus 19 18 0.95 10629 BK polyomavirus 1417 1362 0.96 10631 BK virus strain AS 5 5 1.00 10632 JC polyomavirus 3785 3732 0.99 10633 Simian virus 40 168 110 0.65 10635 Mouse polyomavirus (strain 3) 6 6 1.00 10636 Murine polyomavirus strain A2 5 5 1.00 10637 Mouse polyomavirus (strain Crawford small-plaque) 5 5 1.00 10640 Carnation etched ring virus 23 16 0.70 10644 Cauliflower mosaic virus (STRAIN CM-1841) 6 6 1.00 10645 Cauliflower mosaic virus (STRAIN D/H) 8 6 0.75 10648 Cauliflower mosaic virus (STRAIN STRASBOURG) 6 6 1.00 10650 Figwort mosaic virus (STRAIN DXS) 7 4 0.57 10651 Soybean chlorotic mottle virus 9 4 0.44 10653 Commelina yellow mottle virus 3 2 0.67 10655 Rice tungro bacilliform virus (isolate Philippines) 4 3 0.75 10658 Enterobacteria phage PRD1 61 22 0.36 10661 Pseudoalteromonas phage PM2 21 1 0.05 10665 Enterobacteria phage T4 616 279 0.45 10677 Enterobacteria phage Mu 72 31 0.43 10678 Enterobacteria phage P1 160 50 0.31 10679 Enterobacteria phage P2 99 72 0.73 10680 Enterobacteria phage P4 15 6 0.40 10685 Bacillus phage SPO1 239 38 0.16 10690 Haemophilus phage HP1 41 23 0.56 10710 Enterobacteria phage lambda 140 111 0.79 10719 Streptomyces phage phiC31 64 19 0.30 10726 Enterobacteria phage T5 268 69 0.26 10752 Enterobacteria phage N4 72 12 0.17 10754 Enterobacteria phage P22 151 84 0.56 10756 Bacillus phage phi29 59 26 0.44 10757 Bacillus phage PZA 27 12 0.44 10760 Enterobacteria phage T7 458 247 0.54 10783 Aleutian mink disease parvovirus (STRAIN G) 4 2 0.50 10787 Feline panleukopenia virus (strain 193) 2 2 1.00 10791 Canine parvovirus strain N 2 2 1.00 10793 Mink enteritis virus strain Abashiri 2 2 1.00 10795 Murine minute virus (STRAIN MVMI) 2 2 1.00 10797 Porcine parvovirus NADL-2 2 2 1.00 10799 H-1 parvovirus 4 4 1.00 10808 Aedes densonucleosis virus (STRAIN GKV 002 002) 2 1 0.50 10809 Bombyx mori densovirus 5 1 0.20 10816 Abutilon mosaic virus - [WEST INDIA] 7 7 1.00 10818 African cassava mosaic virus - [West Kenya 844] 8 8 1.00 10822 Maize streak virus - [Kenya] 4 4 1.00 10823 Maize streak virus - [Nigeria] 4 4 1.00 10824 Maize streak virus - [South Africa] 4 4 1.00 10829 Squash leaf curl virus 66 61 0.92 10843 Enterobacteria phage G4 55 54 0.98 10844 Enterobacteria phage S13 21 21 1.00 10847 Enterobacteria phage phiX174 284 283 1.00 10848 Enterobacteria phage phiK 10 9 0.90 10849 Enterobacteria phage alpha3 22 19 0.86 10854 Spiroplasma phage 1-R8A2B 12 5 0.42 10855 Spiroplasma phage 4 9 1 0.11 10857 Chlamydia phage Chp1 8 2 0.25 10863 Enterobacteria phage f1 53 41 0.77 10864 Enterobacteria phage fd 10 7 0.70 10867 Enterobacteria phage Ike 11 7 0.64 10868 Enterobacteria phage If1 10 6 0.60 10870 Enterobacteria phage M13 13 10 0.77 10871 Pseudomonas phage Pf1 27 9 0.33 10872 Pseudomonas phage Pf3 9 3 0.33 10879 Pseudomonas phage phi6 147 47 0.32 10884 Mammalian orthoreovirus 1 Lang 33 28 0.85 10885 Mammalian orthoreovirus 2 D5/Jones 34 26 0.76 10886 Mammalian orthoreovirus 3 Dearing 52 39 0.75 10900 Bluetongue virus (serotype 10 / American isolate) 11 11 1.00 10916 Porcine rotavirus C strain Cowden 11 9 0.82 10933 Bovine rotavirus strain RF 12 12 1.00 10934 Bovine rotavirus strain UK/G6 12 12 1.00 10942 Human rotavirus B 154 31 0.20 10944 Human rotavirus serotype 1 / strain 1076 3 3 1.00 10947 Human rotavirus serotype 1 / strain 69M 12 12 1.00 10948 Human rotavirus (SEROTYPE 2 / STRAIN HU5) 1 1 1.00 10949 Human rotavirus (SEROTYPE G / STRAIN B37) 3 3 1.00 10950 Human rotavirus (SEROTYPE 2 / STRAIN DS1) 12 12 1.00 10951 Human rotavirus (SEROTYPE 2 / STRAIN HN126) 1 1 1.00 10952 Human rotavirus strain KU 12 12 1.00 10953 Human rotavirus (STRAIN L26) 12 12 1.00 10954 Human rotavirus serotype 1 / strain M37 4 4 1.00 10955 Human rotavirus strain MCN13 1 1 1.00 10956 Human rotavirus serotype 1 / strain MO 3 3 1.00 10957 Human rotavirus strain P 12 12 1.00 10959 Human rotavirus (SEROTYPE 2 / STRAIN S2) 7 7 1.00 10960 Human rotavirus G4 strain St. Thomas 3 12 12 1.00 10961 Human rotavirus G4 strain VA70 3 3 1.00 10962 Human rotavirus strain WA 28 28 1.00 10986 Rice gall dwarf virus 48 28 0.58 11003 Infectious pancreatic necrosis virus - Jasper 3 3 1.00 11005 Infectious pancreatic necrosis virus - Sp 53 53 1.00 11008 Saccharomyces cerevisiae virus L-A (L1) 7 5 0.71 11020 Barmah Forest virus 33 32 0.97 11021 Eastern equine encephalitis virus 804 587 0.73 11022 Eastern equine encephalitis virus (STRAIN VA33[TEN BROECK]) 1 1 1.00 11028 O'nyong-nyong virus (strain Gulu) 2 2 1.00 11030 Ross river virus (STRAIN 213970) 1 1 1.00 11031 Ross river virus (STRAIN NB5092) 2 2 1.00 11032 Ross river virus (STRAIN T48) 2 2 1.00 11033 Semliki forest virus 21 19 0.90 11034 Sindbis virus 177 152 0.86 11037 Venezuelan equine encephalitis virus (strain TC-83) 1 1 1.00 11038 Venezuelan equine encephalitis virus (strain Trinidad donkey) 2 2 1.00 11039 Western equine encephalomyelitis virus 103 102 0.99 11043 Rubella virus strain M33 2 2 1.00 11044 Rubella virus vaccine strain RA27/3 2 2 1.00 11045 Rubella virus strain Therien 2 2 1.00 11049 Lelystad virus 8 8 1.00 11057 Dengue virus 1 Thailand/AHF 82-80/1980 1 1 1.00 11058 Dengue virus 1 Jamaica/CV1636/1977 1 1 1.00 11059 Dengue virus 1 Nauru/West Pac/1974 1 1 1.00 11062 Dengue virus 2 Malaysia M2 1 1 1.00 11063 Dengue virus 2 Malaysia M3 1 1 1.00 11064 Dengue virus 2 Jamaica/1409/1983 1 1 1.00 11065 Dengue virus 2 Thailand/NGS-C/1944 1 1 1.00 11066 Dengue virus 2 Puerto Rico/PR159-S1/1969 1 1 1.00 11067 Dengue virus 2 Tonga/EKB194/1974 1 1 1.00 11068 Dengue virus 2 Thailand/PUO-218/1980 1 1 1.00 11073 Japanese encephalitis virus strain SA-14 2 2 1.00 11074 Japanese encephalitis virus strain SA(V) 1 1 1.00 11075 Japanese encephalitis virus strain JAOARS982 1 1 1.00 11076 Japanese encephalitis virus strain Nakayama 3 3 1.00 11078 Kunjin virus (STRAIN MRM61C) 1 1 1.00 11081 St. Louis encephalitis virus (strain MS1-7) 1 1 1.00 11082 West Nile virus 2043 2035 1.00 11086 Louping ill virus 15 15 1.00 11087 Tick-borne encephalitis virus (STRAIN SOFJIN) 1 1 1.00 11088 Tick-borne encephalitis virus (WESTERN SUBTYPE) 1 1 1.00 11090 Yellow fever virus 17D 1 1 1.00 11097 Hog cholera virus (strain Alfort) 1 1 1.00 11098 Classical swine fever virus - Brescia 1 1 1.00 11100 Bovine viral diarrhea virus 1-NADL 2 1 0.50 11104 Hepatitis C virus (isolate 1) 2 2 1.00 11105 Hepatitis C virus (isolate BK) 1 1 1.00 11106 Hepatitis C virus (isolate EC10) 1 1 1.00 11107 Hepatitis C virus (isolate EC1) 1 1 1.00 11108 Hepatitis C virus (isolate H) 2 2 1.00 11109 Hepatitis C virus (isolate HCT27) 1 1 1.00 11110 Hepatitis C virus (isolate HCT18) 1 1 1.00 11111 Hepatitis C virus (isolate HC-J2) 1 1 1.00 11112 Hepatitis C virus (isolate HC-J5) 1 1 1.00 11113 Hepatitis C virus isolate HC-J6 1 1 1.00 11114 Hepatitis C virus (isolate HC-J7) 1 1 1.00 11115 Hepatitis C virus isolate HC-J8 1 1 1.00 11116 Hepatitis C virus (isolate Japanese) 1 1 1.00 11117 Hepatitis C virus (isolate TH) 1 1 1.00 11122 Avian infectious bronchitis virus (strain Beaudette) 10 10 1.00 11127 Avian infectious bronchitis virus (strain M41) 10 10 1.00 11132 Bovine coronavirus Mebus 12 12 1.00 11133 Bovine coronavirus strain Quebec 12 12 1.00 11137 Human coronavirus 229E 111 84 0.76 11142 Murine hepatitis virus strain A59 23 23 1.00 11144 Murine hepatitis virus strain JHM 11 11 1.00 11151 Porcine transmissible gastroenteritis coronavirus strain Purdue 9 9 1.00 11156 Berne virus 9 6 0.67 11162 Mumps virus (STRAIN EDINGBURGH 2) 1 1 1.00 11163 Mumps virus (STRAIN EDINGBURGH 4) 1 1 1.00 11164 Mumps virus (STRAIN EDINGBURGH 6) 1 1 1.00 11165 Mumps virus (STRAIN MATSUYAMA) 1 1 1.00 11166 Mumps virus (STRAIN BELFAST) 1 1 1.00 11167 Mumps virus (STRAIN ENDERS) 3 3 1.00 11168 Mumps virus strain Jeryl Lynn 28 25 0.89 11169 Mumps virus (STRAIN KILHAM) 1 1 1.00 11170 Mumps virus (STRAIN BRISTOL 1) 1 1 1.00 11171 Mumps virus (STRAIN MIYAHARA VACCINE) 8 8 1.00 11172 Mumps virus (STRAIN RW) 3 3 1.00 11173 Mumps virus (STRAIN SBL-1) 7 7 1.00 11174 Mumps virus (STRAIN TAKAHASHI) 1 1 1.00 11175 Mumps virus (STRAIN URABE VACCINE AM9) 1 1 1.00 11195 Sendai virus (strain Fushimi) 11 9 0.82 11198 Sendai virus (Z) 9 8 0.89 11208 Simian virus 5 (strain W3) 8 7 0.88 11210 Human parainfluenza virus 1 (C39) 5 5 1.00 11211 HPIV-1 (human/Washington/1957) 2 2 1.00 11212 Human parainfluenza virus 2 37 37 1.00 11213 Human parainfluenza virus 2 (strain Greer) 1 1 1.00 11214 Human parainfluenza virus 2 (strain Toshiba) 7 7 1.00 11217 Human parainfluenza 3 virus (strain NIH 47885) 7 7 1.00 11218 Human parainfluenza 3 virus (strain AUS/124854/74) 1 1 1.00 11219 Human parainfluenza 3 virus (strain TEX/545/80) 1 1 1.00 11220 Human parainfluenza 3 virus (strain TEX/9305/82) 1 1 1.00 11221 Human parainfluenza 3 virus (strain TEX/12677/83) 1 1 1.00 11222 Human parainfluenza 3 virus (strain WASH/641/79) 1 1 1.00 11223 Human parainfluenza 3 virus (strain WASH/1511/73) 1 1 1.00 11225 Human parainfluenza virus 4a (strain Toshiba) 5 5 1.00 11227 Human parainfluenza virus 4b (strain 68-333) 4 4 1.00 11228 Simian virus 41 9 9 1.00 11233 Canine distemper virus strain Onderstepoort 17 17 1.00 11235 Measles virus strain Edmonston 10 10 1.00 11236 Measles virus strain Halle 5 4 0.80 11237 Measles virus strain IP-3-CA 7 7 1.00 11238 Measles virus strain HU2 1 1 1.00 11239 Measles virus strain Yamagata-1 7 7 1.00 11247 Bovine respiratory syncytial virus ATCC51908 12 11 0.92 11250 Human respiratory syncytial virus 4364 3806 0.87 11251 Human respiratory syncytial virus (subgroup B / strain 18537) 8 7 0.88 11252 Human respiratory syncytial virus (strain RSB642) 1 1 1.00 11253 Human respiratory syncytial virus (strain RSB1734) 1 1 1.00 11254 Human respiratory syncytial virus (strain RSB5857) 1 1 1.00 11255 Human respiratory syncytial virus (strain RSB6190) 1 1 1.00 11256 Human respiratory syncytial virus (strain RSB6256) 1 1 1.00 11257 Human respiratory syncytial virus (strain RSB6614) 1 1 1.00 11258 Human respiratory syncytial virus (subgroup B / strain 8/60) 2 2 1.00 11259 Human respiratory syncytial virus A2 13 11 0.85 11260 Human respiratory syncytial virus A strain Long 6 6 1.00 11261 Human respiratory syncytial virus strain RSS-2 1 1 1.00 11273 Chandipura virus I653514 7 5 0.71 11278 Vesicular stomatitis Indiana virus strain Glasgow 5 4 0.80 11279 Vesicular stomatitis Indiana virus strain Mudd-Summers 4 3 0.75 11281 Vesicular stomatitis virus (serotype New Jersey / strain Hazelhurst) 1 1 1.00 11282 Vesicular stomatitis virus (serotype New Jersey / strain Missouri) 2 1 0.50 11283 Vesicular stomatitis virus (serotype New Jersey / strain Ogden) 6 5 0.83 11284 Vesicular stomatitis Indiana virus strain Orsay 1 1 1.00 11285 Vesicular stomatitis Indiana virus strain San Juan 6 5 0.83 11293 Rabies virus AVO1 6 5 0.83 11294 Rabies virus CVS-11 4 4 1.00 11295 Rabies virus ERA 5 5 1.00 11296 Rabies virus HEP-FLURY 5 5 1.00 11297 Rabies virus PM 1 1 1.00 11298 Rabies virus Nishigahara RCEH 5 5 1.00 11300 Rabies virus SAD B19 5 5 1.00 11307 Sonchus yellow net virus 6 1 0.17 11319 Dhori virus (strain Indian/1313/61) 5 3 0.60 11340 Influenza A virus (A/chicken/Japan/24(H7N7)) 2 2 1.00 11375 Influenza A virus (A/Dunedin/4/73(H3N2)) 2 2 1.00 11384 Influenza A virus (A/chicken/FPV/Weybridge(H7N7)) 5 5 1.00 11397 Influenza A virus (A/equine/Cornell/16/74(H7N7)) 7 7 1.00 11418 Influenza A virus (STRAIN A/EQUINE/TOKYO/71) 1 1 1.00 11482 Influenza A virus (STRAIN A/VICTORIA/5/68) 1 1 1.00 11495 Influenza A virus (STRAIN A/SWINE/GERMANY/2/81) 1 1 1.00 11521 Influenza B virus (B/Ann Arbor/1/1986) 13 13 1.00 11522 Influenza B virus (B/Ann Arbor/1/1966 [cold-adapted]) 7 7 1.00 11523 Influenza B virus (B/Ann Arbor/1/1966 [wild- type]) 7 7 1.00 11524 Influenza B virus (STRAIN B/BA/78) 1 1 1.00 11525 Influenza B virus (STRAIN B/BEIJING/1/87) 3 3 1.00 11527 Influenza B virus (STRAIN B/ENGLAND/222/82) 1 1 1.00 11528 Influenza B virus (B/FUKUOKA/80/81) 1 1 1.00 11529 Influenza B virus (B/GA/86) 1 1 1.00 11530 Influenza B virus (STRAIN B/GL/54) 2 2 1.00 11531 Influenza B virus (STRAIN B/HONG KONG/8/73) 4 4 1.00 11532 Influenza B virus (STRAIN B/HT/84) 1 1 1.00 11534 Influenza B virus (STRAIN B/ID/86) 2 2 1.00 11536 Influenza B virus (STRAIN B/LENINGRAD/179/86) 2 2 1.00 11537 Influenza B virus (STRAIN B/MARYLAND/59) 4 4 1.00 11538 Influenza B virus (STRAIN B/MEMPHIS/6/86) 3 3 1.00 11540 Influenza B virus (STRAIN B/NAGASAKI/1/87) 1 1 1.00 11541 Influenza B virus (B/Oregon/5/80) 3 3 1.00 11542 Influenza B virus (STRAIN B/PA/79) 1 1 1.00 11543 Influenza B virus (STRAIN B/RU/69) 1 1 1.00 11545 Influenza B virus (STRAIN B/SINGAPORE/64) 2 2 1.00 11547 Influenza B virus (STRAIN B/VICTORIA/3/85) 3 3 1.00 11548 Influenza B virus (STRAIN B/VICTORIA/87) 1 1 1.00 11550 Influenza B virus (B/Yamagata/1/73) 5 5 1.00 11553 Influenza C virus (C/Ann Arbor/1/50) 10 10 1.00 11554 Influenza C virus (C/Berlin/1/85) 1 1 1.00 11556 Influenza C virus (C/England/892/1983) 1 1 1.00 11557 Influenza C virus (C/Great Lakes/1167/1954) 3 3 1.00 11560 Influenza C virus (C/JJ/1950) 13 13 1.00 11564 Influenza C virus (C/pig/Beijing/10/1981) 1 1 1.00 11566 Influenza C virus (C/PIG/Beijing/439/1982) 1 1 1.00 11567 Influenza C virus (C/Taylor/1233/1947) 4 4 1.00 11568 Influenza C virus (C/Yamagata/10/1981) 5 5 1.00 11577 La Crosse virus 287 220 0.77 11578 La Crosse virus L74 2 2 1.00 11580 Snowshoe hare virus 8 7 0.88 11583 HoJo virus 1 1 1.00 11587 Punta Toro virus 14 11 0.79 11588 Rift Valley fever virus 535 440 0.82 11589 Rift valley fever virus (STRAIN ZH-548 M12) 4 4 1.00 11590 Toscana virus 110 108 0.98 11594 Crimean-Congo hemorrhagic fever virus (isolate C68031) 1 1 1.00 11595 Dugbe virus 86 61 0.71 11601 Hantaan virus Lee 1 1 1.00 11602 Hantaan virus 76-118 3 3 1.00 11605 Puumala virus (STRAIN HALLNAS B1) 3 3 1.00 11610 Seoul virus SR11 2 2 1.00 11619 Junin virus 200 200 1.00 11621 Lassa virus GA391 2 2 1.00 11622 Lassa virus Josiah 4 4 1.00 11624 Lymphocytic choriomeningitis virus (strain Armstrong) 4 4 1.00 11625 Lymphocytic choriomeningitis virus (strain Pasteur) 1 1 1.00 11626 Lymphocytic choriomeningitis virus (strain Traub) 1 1 1.00 11627 Lymphocytic choriomeningitis virus (strain WE) 46 46 1.00 11628 Machupo virus 107 107 1.00 11630 Pichinde virus 22 21 0.95 11644 Simian foamy virus (TYPE 3 / STRAIN LK3) 5 5 1.00 11678 Human immunodeficiency virus type 1 BH10 9 9 1.00 11679 Human immunodeficiency virus type 1 (CLONE 12) 5 5 1.00 11680 Human immunodeficiency virus type 1 (ZAIRE 3 ISOLATE) 4 3 0.75 11681 Human immunodeficiency virus type 1 (Z-84 ISOLATE) 5 3 0.60 11682 Human immunodeficiency virus type 1 (BH5 ISOLATE) 5 5 1.00 11683 Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE) 9 9 1.00 11684 Human immunodeficiency virus type 1 (BH8 ISOLATE) 4 4 1.00 11685 HIV-1 M:B_ARV2/SF2 9 9 1.00 11686 Human immunodeficiency virus type 1 (BRU ISOLATE) 9 9 1.00 11687 Human immunodeficiency virus type 1 (CDC-451 ISOLATE) 7 6 0.86 11688 Human immunodeficiency virus type 1 (JRCSF ISOLATE) 9 9 1.00 11689 Human immunodeficiency virus type 1 (ELI ISOLATE) 9 9 1.00 11690 Human immunodeficiency virus type 1 (SF33 ISOLATE) 5 5 1.00 11691 Human immunodeficiency virus type 1 (SF162 ISOLATE) 5 5 1.00 11692 Human immunodeficiency virus type 1 (ZAIRE HZ321 ISOLATE) 5 4 0.80 11693 Human immunodeficiency virus type 1 (BRAIN ISOLATE) 5 4 0.80 11694 Human immunodeficiency virus type 1 (JH3 ISOLATE) 7 5 0.71 11695 Human immunodeficiency virus type 1 (NDK ISOLATE) 8 8 1.00 11696 HIV-1 M:B_MN 9 9 1.00 11697 Human immunodeficiency virus type 1 (MAL ISOLATE) 9 9 1.00 11698 Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) 6 6 1.00 11699 Human immunodeficiency virus type 1 (OYI ISOLATE) 8 8 1.00 11701 Human immunodeficiency virus type 1 (RF/HAT ISOLATE) 9 9 1.00 11702 Human immunodeficiency virus type 1 (SC ISOLATE) 7 7 1.00 11703 Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455) 6 6 1.00 11704 Human immunodeficiency virus type 1 (MFA ISOLATE) 1 1 1.00 11705 Human immunodeficiency virus type 1 (WMJ2 ISOLATE) 5 4 0.80 11706 HIV-1 M:B_HXB2R 9 9 1.00 11707 Human immunodeficiency virus type 1 (HXB3 ISOLATE) 6 6 1.00 11708 Human immunodeficiency virus type 1 (ZAIRE 6 ISOLATE) 6 6 1.00 11713 Human immunodeficiency virus type 2 (ISOLATE D194) 9 9 1.00 11714 Human immunodeficiency virus type 2 (ISOLATE BEN) 9 9 1.00 11715 Human immunodeficiency virus type 2 (ISOLATE CAM2) 9 9 1.00 11716 Human immunodeficiency virus type 2 (ISOLATE D205,7) 9 9 1.00 11717 Human immunodeficiency virus type 2 (ISOLATE GHANA-1) 9 9 1.00 11718 Human immunodeficiency virus type 2 (ISOLATE SBLISY) 9 9 1.00 11719 Human immunodeficiency virus type 2 (ISOLATE NIH-Z) 9 9 1.00 11720 Human immunodeficiency virus type 2 (ISOLATE ROD) 9 9 1.00 11721 Human immunodeficiency virus type 2 (ISOLATE ST) 10 10 1.00 11723 Simian immunodeficiency virus 25978 21951 0.84 11733 Simian immunodeficiency virus (MM142-83 ISOLATE) 9 9 1.00 11737 Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY) 9 9 1.00 11738 Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY) 9 9 1.00 11746 Jaagsiekte sheep retrovirus 50 49 0.98 11759 Mouse mammary tumor virus (STRAIN C3H) 5 5 1.00 11764 Baboon endogenous virus strain M7 5 5 1.00 11787 Radiation murine leukemia virus 3 3 1.00 11791 AKR (endogenous) murine leukemia virus 3 3 1.00 11796 Friend murine leukemia virus (ISOLATE 57) 3 3 1.00 11797 Friend murine leukemia virus (ISOLATE FB29) 3 3 1.00 11798 Friend murine leukemia virus (ISOLATE PVC-211) 3 3 1.00 11840 Gibbon ape leukemia virus 12 12 1.00 11855 Mason-Pfizer monkey virus 8 8 1.00 11856 Squirrel monkey retrovirus 5 5 1.00 11888 Rous sarcoma virus - Prague C 5 4 0.80 11909 Human T-lymphotropic virus 2 316 234 0.74 11926 Human T-cell lymphotrophic virus type 1 (strain ATK) 9 8 0.89 11927 Human T-cell lymphotrophic virus type 1 (Caribbean isolate) 9 8 0.89 11928 Human T-cell lymphotrophic virus type 1 (isolate MT-2) 2 2 1.00 11942 Simian retrovirus 1 6 5 0.83 11963 Human spumaretrovirus 16 13 0.81 11977 Rabbit hemorrhagic disease virus-V351 3 3 1.00 11979 Feline calicivirus (STRAIN CFI/68 FIV) 3 3 1.00 11980 Feline calicivirus (STRAIN JAPANESE F4) 3 3 1.00 11981 Feline calicivirus (STRAIN F9) 3 3 1.00 11988 Turnip crinkle virus 35 34 0.97 12017 Enterobacteria phage fr 5 4 0.80 12018 Enterobacteria phage GA 4 4 1.00 12027 Enterobacteria phage SP 27 27 1.00 12040 Barley yellow dwarf virus-PAV 435 411 0.94 12043 Beet western yellows virus-FL1 6 6 1.00 12046 Potato leafroll virus (STRAIN 1) 9 7 0.78 12048 Potato leafroll virus (STRAIN WAGENINGEN) 8 6 0.75 12055 Tobacco necrosis virus A 16 12 0.75 12060 Human echovirus 9 380 371 0.98 12065 Bovine enterovirus strain VG-5-27 1 1 1.00 12068 Human coxsackievirus A9 (strain Griggs) 1 1 1.00 12070 Human coxsackievirus A21 (strain Coe) 1 1 1.00 12076 Swine vesicular disease virus (STRAIN H/3 '76) 1 1 1.00 12077 Swine vesicular disease virus (STRAIN UKG/27/72) 1 1 1.00 12081 Human poliovirus 1 Mahoney 3 3 1.00 12082 Human poliovirus 1 strain Sabin 33 28 0.85 12084 Poliovirus type 2 strain Lansing 1 1 1.00 12085 Poliovirus type 2 strain W-2 1 1 1.00 12087 Poliovirus type 3 (strain 23127) 1 1 1.00 12088 Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B) 1 1 1.00 12093 Human hepatitis A virus Shanghai/LCDC-1/1984 1 0 0.00 12097 Human hepatitis A virus Hu/Costa Rica/CR326/1960 1 1 1.00 12098 Human hepatitis A virus Hu/Australia/HM175/1976 1 1 1.00 12099 Human hepatitis A virus Hu/Los Angelos/LA/1975 1 1 1.00 12100 Human hepatitis A virus Hu/Northern Africa/MBB/1978 1 1 1.00 12102 Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985 1 1 1.00 12104 Encephalomyocarditis virus 106 66 0.62 12105 Encephalomyocarditis virus strain emc-b nondiabetogenic 1 1 1.00 12106 Encephalomyocarditis virus strain emc-d diabetogenic 1 1 1.00 12107 Mengo virus 2 2 1.00 12112 Foot-and-mouth disease virus (strain A10-61) 2 1 0.50 12114 Foot-and-mouth disease virus (strain A12) 1 1 1.00 12125 Theiler's encephalomyelitis virus (STRAIN BEAN 8386) 1 1 1.00 12126 Theiler's encephalomyelitis virus (STRAIN DA) 1 1 1.00 12127 Theiler's encephalomyelitis virus (STRAIN GDVII) 2 2 1.00 12129 Human rhinovirus 1B 3 3 1.00 12130 Human rhinovirus 2 5 5 1.00 12131 Human rhinovirus 14 3 3 1.00 12134 Human rhinovirus 1A 8 8 1.00 12143 Cucumber necrosis virus 12 12 1.00 12144 Cymbidium ringspot virus 8 8 1.00 12147 Tomato bushy stunt virus (STRAIN CHERRY) 4 4 1.00 12151 Eggplant mosaic virus 4 4 1.00 12153 Ononis yellow mosaic virus 3 3 1.00 12154 Turnip yellow mosaic virus 27 18 0.67 12155 Turnip yellow mosaic virus (Australian isolate) 3 3 1.00 12168 Potato virus M (strain Russian) 6 6 1.00 12179 Foxtail mosaic virus 15 15 1.00 12180 Narcissus mosaic virus 7 6 0.86 12181 Papaya mosaic virus 18 16 0.89 12183 Potato virus X 164 163 0.99 12184 Potato virus X (strain CP) 5 5 1.00 12185 Potato virus X (strain X3) 5 5 1.00 12187 Strawberry mild yellow edge virus 67 36 0.54 12189 White clover mosaic virus (strain M) 5 5 1.00 12190 White clover mosaic virus (strain O) 5 5 1.00 12197 Bean yellow mosaic virus 110 98 0.89 12212 Plum pox virus D 2 1 0.50 12213 Plum pox virus (isolate NAT) 2 1 0.50 12214 Plum pox virus (strain Rankovic) 1 1 1.00 12215 Potato virus A 70 69 0.99 12219 Potato virus Y strain N 17 16 0.94 12223 Soybean mosaic virus N 2 1 0.50 12227 Tobacco etch virus 86 73 0.85 12228 Tobacco vein mottling virus 6 5 0.83 12230 Turnip mosaic virus 1019 1018 1.00 12236 Cucumber green mottle mosaic virus (watermelon strain SH) 3 3 1.00 12240 Sunn-hemp mosaic virus 3 3 1.00 12241 Tobacco mild green mosaic virus 52 52 1.00 12243 Tobacco mosaic virus (vulgare) 3 3 1.00 12251 Tobacco mosaic virus strain OM 3 3 1.00 12252 Tobacco mosaic virus strain tomato/L 3 3 1.00 12262 Red clover mottle virus 5 5 1.00 12267 Red clover necrotic mosaic virus 9 8 0.89 12273 Grapevine chrome mosaic virus 2 2 1.00 12274 Grapevine fanleaf virus 408 367 0.90 12281 Tomato ringspot virus (isolate raspberry) 4 2 0.50 12301 Broad bean mottle virus 6 6 1.00 12302 Brome mosaic virus 25 24 0.96 12303 Cowpea chlorotic mottle virus 20 20 1.00 12307 Cucumber mosaic virus (strain FNY) 5 5 1.00 12310 Cucumber mosaic virus (strain Q) 6 6 1.00 12315 Tomato aspermy virus 43 41 0.95 12318 Tobacco streak virus (strain WC) 5 4 0.80 12322 Alfalfa mosaic virus (strain 425 / isolate Leiden) 4 4 1.00 12327 Barley stripe mosaic virus 39 38 0.97 12455 Borna disease virus 308 240 0.78 12456 Human astrovirus 1 533 516 0.97 12478 Cryphonectria hypovirus 1-EP713 2 2 1.00 12538 Mokola virus 61 60 0.98 12557 Seoul virus 80-39 2 2 1.00 12701 Human astrovirus 2 69 69 1.00 12968 Blastocystis hominis 5831 3801 0.65 13373 Burkholderia mallei 4842 3680 0.76 13616 Monodelphis domestica 31612 27148 0.86 13642 Polysphondylium pallidum 12451 7205 0.58 13686 Solenopsis invicta 14334 7792 0.54 28276 Human adenovirus 15 58 54 0.93 28280 Human adenovirus 4 236 203 0.86 28282 Human adenovirus 12 42 40 0.95 28284 Human adenovirus 40 80 78 0.97 28285 Human adenovirus 5 174 162 0.93 28292 Sandfly fever sicilian virus 27 25 0.93 28300 Heron hepatitis B virus 11 11 1.00 28311 Human papillomavirus type 63 7 7 1.00 28312 Human papillomavirus type 65 7 6 0.86 28321 Amsacta moorei entomopoxvirus 'L' 279 83 0.30 28354 Plantago asiatica mosaic virus 24 24 1.00 28365 Xanthomonas phage Lf 9 4 0.44 28377 Anolis carolinensis 9333 7673 0.82 28450 Burkholderia pseudomallei 6147 5004 0.81 28877 IDIR agent 8 2 0.25 28901 Salmonella enterica 6241 5215 0.84 29252 Enterobacteria phage 186 45 36 0.80 29272 Turnip vein-clearing virus 10 10 1.00 29390 Streptococcus gordonii str. Challis 2056 1647 0.80 29471 Pectobacterium atrosepticum 4558 3852 0.85 29519 Borrelia garinii 1992 1549 0.78 29760 Vitis vinifera 54204 35746 0.66 31234 Caenorhabditis remanei 31838 19168 0.60 31510 Duck hepatitis B virus strain China 5 5 1.00 31512 Hepatitis B virus adr/mutant 4 4 1.00 31513 Hepatitis B virus adr/NC-1 1 1 1.00 31514 Hepatitis B virus adw/Philippino/PFDW294 4 4 1.00 31515 Hepatitis B virus adw2 variant SF 1 1 1.00 31520 Equine herpesvirus type 1 (strain AB4P) 75 69 0.92 31523 Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) 79 70 0.89 31525 Human herpesvirus 4 (strain CAO) 1 1 1.00 31530 Myxoma virus (strain Lausanne) 159 141 0.89 31531 Vaccinia virus L-IPV 22 19 0.86 31537 Lactococcus phage c2 44 7 0.16 31544 Human adenovirus 16 58 47 0.81 31545 Human adenovirus 8 155 146 0.94 31547 Human papillomavirus type 20 8 7 0.88 31548 Human papillomavirus type 21 9 8 0.89 31553 Papillomavirus sylvilagi (STRAIN KANSAS) 8 6 0.75 31556 Cauliflower mosaic virus (STRAIN BBC) 6 5 0.83 31557 Cauliflower mosaic virus (STRAIN NY8153) 6 6 1.00 31565 Human rotavirus (group C / strain 88-220) 1 1 1.00 31566 Human rotavirus (group C / strain Belem) 1 1 1.00 31567 Human rotavirus (group C / strain Bristol) 11 10 0.91 31568 Human rotavirus (group C / strain Preston) 1 1 1.00 31569 Human rotavirus (serotype 2 / strain RV-5) 3 3 1.00 31570 Human rotavirus 1 strain RV4 2 2 1.00 31571 Rotavirus A human/A28/G10 1 1 1.00 31574 Human rotavirus (strain IGV-80-3) 1 1 1.00 31599 Tobacco yellow dwarf virus (strain Australia) 4 4 1.00 31600 Indian cassava mosaic virus 38 36 0.95 31605 Human parainfluenza virus 1 (C35) 2 2 1.00 31606 Human parainfluenza 1 virus (strain CI-14/83) 2 2 1.00 31607 Human parainfluenza 1 virus (strain CI-5/73) 2 2 1.00 31608 Simian virus 5 (isolate canine/CPI+) 1 1 1.00 31609 Simian virus 5 (isolate canine/CPI-) 1 1 1.00 31610 Simian virus 5 (isolate human/LN) 1 1 1.00 31613 Rabies virus strain Street 1 1 1.00 31617 Hantaan virus B-1 1 1 1.00 31620 Seoul virus R22 1 1 1.00 31631 Human coronavirus OC43 157 50 0.32 31634 Dengue virus 2 Thailand/16681/84 2 2 1.00 31635 Dengue virus 2 16681-PDK53 1 1 1.00 31636 Dengue virus 2 China/D2-04 1 1 1.00 31637 Dengue virus 2 Thailand/TH-36/1958 1 1 1.00 31638 Langat virus (strain TP21) 1 1 1.00 31639 Langat virus (strain Yelantsev) 1 1 1.00 31640 Louping ill virus (strain SB 526) 1 1 1.00 31641 Yellow fever virus 1899/81 1 1 1.00 31642 Hepatitis C virus (isolate HC-JT) 1 1 1.00 31643 Hepatitis C virus (isolate HCV-476) 1 1 1.00 31644 Hepatitis C virus (isolate HCV-KF) 1 1 1.00 31645 Hepatitis C virus (isolate Taiwan) 1 1 1.00 31656 Bovine viral diarrhea virus 1-SD1 1 1 1.00 31658 Cell fusing agent virus 26 21 0.81 31663 Influenza A virus (A/turkey/Bethlehem-Glilit/1492-B/1982(H1N1)) 2 2 1.00 31678 Human immunodeficiency virus type 1 (WMJ1 isolate) 1 1 1.00 31681 Human immunodeficiency virus type 2 (isolate ST/24.1C#2) 1 1 1.00 31699 Ockelbo virus 2 2 1.00 31702 Mengo encephalomyocarditis virus (strain 37A) 1 1 1.00 31705 Echovirus 11 (strain Gregory) 1 1 1.00 31706 Human hepatitis A virus Hu/Georgia/GA76/1976 1 1 1.00 31707 Simian hepatitis A virus Macaca/Philippines/CY-145/1988 1 1 1.00 31708 Human rhinovirus 16 4 4 1.00 31715 Bean-pod mottle virus (strain Kentucky G7) 2 2 1.00 31716 Cowpea severe mosaic virus (strain DG) 2 2 1.00 31728 Barley yellow mosaic virus (German isolate) 2 2 1.00 31729 Barley yellow mosaic virus (Japanese strain II-1) 2 2 1.00 31731 Papaya ringspot virus (strain P / mutant HA) 2 1 0.50 31736 Pea seed-borne mosaic virus (strain DPD1) 2 1 0.50 31737 Pepper mottle virus (California isolate) 2 1 0.50 31739 Potato virus Y strain Hungarian 2 1 0.50 31745 Pepper mild mottle virus (strain Spain) 3 3 1.00 31746 Tobacco mosaic virus strain Korean 3 3 1.00 31749 Obuda pepper virus 3 3 1.00 31757 Mycobacterium phage L5 85 21 0.25 31762 Hepatitis delta virus (ISOLATE D380) 2 2 1.00 31763 Hepatitis delta virus (ISOLATE LEBANON-1) 2 2 1.00 31764 Hepatitis delta virus (isolate woodchuck) 2 2 1.00 31766 Hepatitis E virus (isolate rhesus) 1 1 1.00 31767 Hepatitis E virus (strain Burma) 3 3 1.00 31768 Hepatitis E virus (strain Mexico) 3 3 1.00 31769 Hepatitis E virus (strain Myanmar) 3 3 1.00 31770 Shallot virus X 13 13 1.00 31915 Human enterovirus 70 (strain J670/71) 1 1 1.00 31964 Clavibacter michiganensis subsp. sepedonicus 3089 2208 0.71 32049 Synechococcus sp. PCC 7002 3274 2430 0.74 32051 Synechococcus sp. WH 7803 2540 1821 0.72 32604 Human herpesvirus 6B 143 105 0.73 33722 Human rotavirus (serotype G / strain RK9) 1 1 1.00 33727 Marburg virus - Musoke, Kenya, 1980 7 7 1.00 33728 Lake Victoria marburgvirus - Popp 7 7 1.00 33729 Mumps virus (strain SBL) 5 5 1.00 33730 Simian virus 5 (strain 21004-WR) 1 1 1.00 33734 Feline infectious peritonitis virus (strain 79-1146) 10 8 0.80 33741 Dengue virus 1 Singapore/S275/1990 1 1 1.00 33762 Parsnip yellow fleck virus (isolate P-121) 1 1 1.00 33774 Hepatitis E virus (strain Pakistan) 3 3 1.00 33903 Streptomyces avermitilis 7720 5531 0.72 34765 Oikopleura dioica 29029 15415 0.53 35128 Thalassiosira pseudonana 11819 6899 0.58 35297 Striped Jack nervous necrosis virus 5 4 0.80 35300 Human astrovirus 4 72 69 0.96 35304 Bunyamwera virus 21 21 1.00 35339 LuIII virus 2 2 1.00 35740 Human astrovirus 3 51 49 0.96 35741 Human astrovirus 5 28 26 0.93 36329 Plasmodium falciparum 3D7 5359 3158 0.59 36345 Herpes simplex virus 1 strain R-15 20 3 0.15 36346 Herpes simplex virus (type 1 / strain R19) 1 1 1.00 36351 Human herpesvirus 6 strain Z29 97 72 0.74 36375 Human immunodeficiency virus type 1 (KB-1 isolate) 1 1 1.00 36376 Human immunodeficiency virus type 1 (NIT-A isolate) 1 1 1.00 36382 Venezuelan equine encephalitis virus (strain 3880) 2 2 1.00 36383 Venezuelan equine encephalitis virus (strain Everglades FE3-7C) 1 1 1.00 36384 Venezuelan equine encephalitis virus (strain Mena II) 3 3 1.00 36385 Venezuelan equine encephalitis virus (strain P676) 2 2 1.00 36386 Louping ill virus (strain 31) 1 1 1.00 36387 Louping ill virus (strain K) 1 1 1.00 36388 Louping ill virus (strain Negishi 3248/49/P10) 1 1 1.00 36389 Louping ill virus (strain Norway) 1 1 1.00 36394 Rice stripe virus (isolate T) 7 7 1.00 36396 Turnip mosaic virus (strain Quebec) 2 1 0.50 36402 Apple stem grooving virus (strain P-209) 2 2 1.00 36404 Human coxsackievirus A24 (strain EH24/70) 1 1 1.00 36406 San Miguel sea lion virus 1 3 3 1.00 36408 Measles virus strain AIK-C 14 14 1.00 36409 Rinderpest virus (strain RBOK) 8 8 1.00 36412 Human parainfluenza 1 virus (strains A1426 / 86-315 / 62M-753) 2 2 1.00 36413 Tomato spotted wilt virus (strain Brazilian BR-01) 5 5 1.00 36418 Influenza A virus (A/chicken/Brescia/1902(H7N7)) 19 18 0.95 36449 Tomato mottle virus - [Florida B1] 6 6 1.00 36870 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 612 591 0.97 37106 Herpes simplex virus (type 1 / strain CVG-2) 1 1 1.00 37107 Herpes simplex virus (type 1 / strain MGH-10) 1 1 1.00 37111 Human papillomavirus type 28 7 7 1.00 37112 Human papillomavirus type 29 7 7 1.00 37114 Human papillomavirus type 55 11 11 1.00 37115 Human papillomavirus type 59 52 52 1.00 37116 Human papillomavirus type 61 9 9 1.00 37118 Human papillomavirus type 64 1 1 1.00 37119 Human papillomavirus type 66 178 108 0.61 37120 Human papillomavirus type 67 45 45 1.00 37121 Human papillomavirus type 69 8 8 1.00 37122 Human papillomavirus type 6a 8 8 1.00 37129 Southampton virus (serotype 3) 3 3 1.00 37130 Human astrovirus 6 20 18 0.90 37132 Rabies virus Ontario fox 35 35 1.00 37136 Human rotavirus (strain MC35) 2 2 1.00 37137 Simian rotavirus A/SA11-both 12 12 1.00 37139 Tomato yellow leaf curl virus - [Murcia] 6 6 1.00 37206 Helicoverpa armigera stunt virus 3 2 0.67 37954 Human papillomavirus type 22 8 7 0.88 37955 Human papillomavirus type 23 8 7 0.88 37956 Human papillomavirus type 24 10 9 0.90 37957 Human papillomavirus type 36 11 10 0.91 37958 Human papillomavirus type 37 8 7 0.88 37959 Human papillomavirus type 38 56 55 0.98 38062 Cassava vein mosaic virus 8 3 0.38 38766 Lagos bat virus 78 78 1.00 38767 Duvenhage virus 27 27 1.00 38950 Human astrovirus 7 8 6 0.75 38973 Influenza A virus (A/Memphis/4/1973(H3N2)) 1 1 1.00 38988 Influenza B virus (strain B/finland/145/90) 1 1 1.00 38990 Influenza B virus (strain B/finland/146/90) 1 1 1.00 38991 Influenza B virus (strain B/finland/147/90) 1 1 1.00 38992 Influenza B virus (strain B/finland/148/90) 1 1 1.00 38993 Influenza B virus (strain B/finland/149/90) 1 1 1.00 38994 Influenza B virus (strain B/finland/150/90) 1 1 1.00 38995 Influenza B virus (strain B/finland/151/90) 1 1 1.00 38996 Influenza B virus (strain B/finland/24/85) 1 1 1.00 38997 Influenza B virus (strain B/finland/56/88) 1 1 1.00 38998 Puumala virus (strain berkel) 2 2 1.00 38999 Puumala virus (strain evo/12cg/93) 1 1 1.00 39000 Puumala virus (strain k27) 2 2 1.00 39001 Puumala virus (strain p360) 2 2 1.00 39002 Puumala virus (strain sotkamo/v-2969/81) 3 3 1.00 39003 Puumala virus (strain udmurtia/894cg/91) 2 2 1.00 39005 Rabies virus Ontario skunk 1 1 1.00 39008 Tick-borne powassan virus (strain lb) 1 1 1.00 39011 Human rotavirus serotype 1 / strain a91a 1 1 1.00 39012 Human rotavirus (serotype g1 / strain k8) 4 4 1.00 39013 Human rotavirus AU-1 12 12 1.00 39015 Human T-cell lymphotropic virus type 1 (african isolate) 3 3 1.00 39016 Human T-cell lymphotropic virus type 1 (north american isolate) 1 1 1.00 39068 Simian retrovirus 2 78 78 1.00 39457 Human papillomavirus type 70 19 18 0.95 39720 Walleye dermal sarcoma virus 39 17 0.44 40537 Bovine papillomavirus 5 6 6 1.00 40538 Human papillomavirus type 48 7 6 0.86 40539 Human papillomavirus type 50 7 6 0.86 40540 Human papillomavirus type 60 7 6 0.86 40631 Enterobacteria phage N15 66 35 0.53 41431 Cyanothece sp. PCC 8801 4349 3116 0.72 41514 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- 4500 3576 0.79 41952 Arctic ground squirrel hepatitis B virus 7 7 1.00 42007 Chinese Rape Mosaic Virus 8 7 0.88 42567 Rotavirus G9 290 290 1.00 42764 Oliveros virus 4 4 1.00 43151 Anopheles darlingi 11653 7223 0.62 43358 Human astrovirus 8 51 26 0.51 43989 Cyanothece sp. ATCC 51142 5270 3426 0.65 44130 Human rhinovirus 3 10 9 0.90 44158 Aura virus 3 2 0.67 44689 Dictyostelium discoideum 13113 7571 0.58 44755 New York virus 2 2 1.00 45219 Guanarito virus 77 77 1.00 45221 Latino virus 8 8 1.00 45222 Parana virus 8 8 1.00 45223 Tamiami virus 9 8 0.89 45237 Helminthosporium victoriae virus 190S 2 2 1.00 45240 Human papillomavirus type 68 50 49 0.98 45351 Nematostella vectensis 24934 16508 0.66 45410 Hepatitis B virus adw4/Brazil/isolate w4b 7 7 1.00 45418 Rabies virus vnukovo-32 1 1 1.00 45659 Human adenovirus 3 480 413 0.86 45709 Sabia virus 4 4 1.00 46014 Acholeplasma phage L2 14 2 0.14 46015 Autographa californica nucleopolyhedrovirus 200 134 0.67 46245 Drosophila pseudoobscura pseudoobscura 16333 10592 0.65 46919 Whitewater Arroyo virus 30 25 0.83 46922 Human adenovirus 17 57 52 0.91 49267 Tomato pseudo-curly top virus 6 5 0.83 49891 Pirital virus 55 55 1.00 51033 Human papillomavirus type 73 11 11 1.00 53182 Feline foamy virus 20 15 0.75 54388 Salmonella enterica subsp. enterica serovar Paratyphi A 4130 3639 0.88 55096 Ippy virus 6 6 1.00 56780 Syntrophus aciditrophicus SB 3145 2191 0.70 57119 Bean yellow dwarf virus 9 9 1.00 57278 Human herpesvirus 7 strain JI 102 73 0.72 57279 Human herpesvirus 7 strain MUK 1 1 1.00 58103 Leishmania RNA virus 1 - 1 3 2 0.67 59300 Getah virus 30 24 0.80 59303 Sagiyama virus 8 6 0.75 59374 Fibrobacter succinogenes subsp. succinogenes S85 3807 2353 0.62 59380 Rice yellow stunt virus 14 2 0.14 59463 Myotis lucifugus 20849 17448 0.84 59748 Candidatus Phytoplasma australiense 675 459 0.68 59919 Prochlorococcus marinus subsp. pastoris str. CCMP1986 1946 1362 0.70 59920 Prochlorococcus marinus str. NATL2A 2149 1376 0.64 59922 Prochlorococcus marinus str. MIT 9303 2993 1769 0.59 60480 Shewanella sp. MR-4 3919 3236 0.83 60481 Shewanella sp. MR-7 4004 3261 0.81 61853 Nomascus leucogenys 23118 18653 0.81 62478 Influenza A virus (A/Kitakyushu/93(H3N2)) 6 6 1.00 62928 Azoarcus sp. BH72 3989 3330 0.83 62977 Acinetobacter sp. ADP1 3331 2627 0.79 63186 Zobellia galactanivorans 4713 3148 0.67 63737 Nostoc punctiforme PCC 73102 6607 4571 0.69 64091 Halobacterium sp. NRC-1 2426 1617 0.67 64141 Porcine enterovirus 9 4 4 1.00 64187 Xanthomonas oryzae pv. oryzae 4611 3311 0.72 64471 Synechococcus sp. CC9311 2884 1861 0.65 65393 Cyanothece sp. PCC 7424 5657 3696 0.65 65699 Neisseria meningitidis serogroup A 1903 1522 0.80 65743 Blackcurrant reversion virus 23 23 1.00 66084 Wolbachia sp. wRi 1039 796 0.77 66366 Tomato yellow leaf curl virus - Israel 63 63 1.00 66692 Bacillus clausii KSM-K16 4082 3355 0.82 67605 Human torovirus 2 2 1.00 69014 Thermococcus kodakarensis KOD1 2309 1612 0.70 69153 Human enterovirus 71 (strain BRCR) 1 1 1.00 69159 Human coxsackievirus A16 (strain G-10) 1 1 1.00 69162 Human herpesvirus 5 (strain 1042) 1 1 1.00 69163 Human herpesvirus 5 (strain 2387) 1 1 1.00 69164 Human herpesvirus 5 (strain 4654) 1 1 1.00 69165 Human herpesvirus 5 (strain 5040) 1 1 1.00 69166 Human herpesvirus 5 (strain 5035) 1 1 1.00 69167 Human herpesvirus 5 (strain 5160) 1 1 1.00 69168 Human herpesvirus 5 (strain 5508) 1 1 1.00 69169 Human herpesvirus 5 strain PT 1 1 1.00 69293 Gasterosteus aculeatus 28017 23308 0.83 70146 Measles virus strain Edmonston-B 2 2 1.00 70147 Measles virus strain Leningrad-16 1 1 1.00 70148 Measles virus strain Philadelphia-26 1 1 1.00 70149 Measles virus strain Edmonston-Zagreb 10 10 1.00 70448 Ostreococcus tauri 8029 4841 0.60 70601 Pyrococcus horikoshii OT3 2082 1402 0.67 70733 Tick-borne encephalitis virus (strain HYPR) 1 1 1.00 70794 Ovine astrovirus 3 2 0.67 70863 Shewanella oneidensis 4590 3306 0.72 71421 Haemophilus influenzae Rd KW20 1709 1554 0.91 72003 Diatraea saccharalis densovirus 6 4 0.67 73239 Plasmodium yoelii yoelii 7838 3576 0.46 73472 Apple chlorotic leaf spot virus (isolate APPLE) 3 3 1.00 73473 Apple chlorotic leaf spot virus (isolate PLUM P863) 3 3 1.00 73475 Chicken anemia virus Cuxhaven-1/Germany 3 3 1.00 73476 Chicken anemia virus 82-2/Japan 3 3 1.00 73477 Chicken anemia virus 26P4/USA 4 3 0.75 73478 Chicken anemia virus CIA-1/USA 3 3 1.00 73481 Foot-and-mouth disease virus A22/550/Azerbaijan/65 1 1 1.00 73482 Foot-and-mouth disease virus (strain O1) 6 5 0.83 73483 Human herpesvirus 5 (strain 119) 1 1 1.00 73484 Human immunodeficiency virus type 2 (isolate KR) 9 9 1.00 73487 Porcine parvovirus Kresse 4 2 0.50 73488 Potato virus x (strain HB) 5 5 1.00 73495 Orf virus NZ7 3 2 0.67 74109 Photobacterium profundum 5354 4226 0.79 74546 Prochlorococcus marinus str. MIT 9312 1963 1368 0.70 74547 Prochlorococcus marinus str. MIT 9313 2833 1658 0.59 75379 Thiomonas intermedia K12 3140 2611 0.83 75723 Enterobacteria phage MX1 4 4 1.00 76114 Aromatoleum aromaticum EbN1 4483 3202 0.71 76869 Pseudomonas putida GB-1 5404 4423 0.82 77856 Beak and feather disease virus 442 413 0.93 78245 Xanthobacter autotrophicus Py2 4973 3897 0.78 78540 Sleeping disease virus 44 25 0.57 79691 Human papillomavirus RTRX7 7 6 0.86 79692 Human respiratory syncytial virus B1 11 11 1.00 79694 Human rotavirus (serotype P13 / strain 1845) 1 1 1.00 79700 Rat cytomegalovirus Maastricht 167 80 0.48 79899 Igbo Ora virus 2 2 1.00 79923 Clonorchis sinensis 11242 205 0.02 79929 Methanothermobacter marburgensis str. Marburg 1756 1415 0.81 81824 Monosiga brevicollis 9271 6157 0.66 81972 Arabidopsis lyrata subsp. lyrata 32625 22563 0.69 82658 Lordsdale virus 54 54 1.00 82659 Sapporo virus-Manchester 3 3 1.00 82829 Epstein-barr virus strain p3hr-1 2 1 0.50 82830 Epstein-barr virus strain ag876 75 63 0.84 82831 Equid herpesvirus type 2 strain 86/87 77 66 0.86 82834 Human immunodeficiency virus type 1 lw12.3 isolate 7 7 1.00 83333 Escherichia coli K-12 4475 3980 0.89 83334 Escherichia coli O157:H7 6669 5369 0.81 83555 Chlamydophila abortus 1013 785 0.77 83557 Chlamydophila caviae 1015 744 0.73 83558 Chlamydia pneumoniae 1724 1087 0.63 83560 Chlamydia muridarum 916 693 0.76 84588 Synechococcus sp. WH 8102 2519 1792 0.71 84589 Salmon pancreas disease virus 143 95 0.66 84980 Desulfotalea psychrophila 3233 2402 0.74 85617 Vesicular exanthema of swine virus A48 4 4 1.00 85618 Ateline herpesvirus 3 71 64 0.90 85643 Thauera sp. MZ1T 3927 3218 0.82 85708 Porcine circovirus 2 1726 1349 0.78 85962 Helicobacter pylori 26695 1557 1158 0.74 85963 Helicobacter pylori J99 1488 1164 0.78 88036 Selaginella moellendorffii 33282 23689 0.71 88776 Influenza A virus (A/Brevig Mission/1/1918(H1N1)) 11 11 1.00 90370 Salmonella enterica subsp. enterica serovar Typhi 5374 4297 0.80 90371 Salmonella enterica subsp. enterica serovar Typhimurium 6097 4996 0.82 92829 Xanthomonas axonopodis pv. citri 4381 3392 0.77 93059 Prochlorococcus marinus str. MIT 9211 1857 1345 0.72 93060 Prochlorococcus marinus str. MIT 9215 1985 1382 0.70 93061 Staphylococcus aureus subsp. aureus NCTC 8325 2891 2189 0.76 93062 Staphylococcus aureus subsp. aureus COL 2681 2115 0.79 93838 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) 11 11 1.00 94122 Shewanella sp. ANA-3 4346 3490 0.80 96561 Desulfococcus oleovorans Hxd3 3258 2505 0.77 98827 Influenza B virus (B/Memphis/3/89) 11 11 1.00 98832 Influenza B virus (B/Memphis/12/97) 11 11 1.00 98845 Influenza B virus (B/Panama/45/90) 7 7 1.00 99883 Tetraodon nigroviridis 28154 19116 0.68 100673 Influenza C virus (C/Johannesburg/1/66) 8 8 1.00 100834 Influenza A virus (A/Chicken/Hong Kong/220/97 (H5N1)) 10 10 1.00 100880 Northern cereal mosaic virus 17 1 0.06 101510 Rhodococcus jostii RHA1 9093 6404 0.70 103603 Snakehead virus 6 5 0.83 103690 Nostoc sp. PCC 7120 6160 4142 0.67 103900 Barley mild mosaic virus (strain Na1) 2 2 1.00 103902 Coxsackievirus B1 (strain Japan) 1 1 1.00 103903 Coxsackievirus B3 (strain Nancy) 1 1 1.00 103904 Coxsackievirus B3 (strain Woodruff) 1 1 1.00 103905 Coxsackievirus B4 (strain E2) 1 1 1.00 103906 Coxsackievirus B4 (strain JVB / Benschoten / New York/51) 1 1 1.00 103907 Coxsackievirus B5 (strain Peterborough / 1954/UK/85) 1 1 1.00 103908 Echovirus 1 (strain Farouk / ATCC VR-1038) 1 1 1.00 103909 Echovirus 12 (strain Travis) 1 1 1.00 103910 Echovirus 16 (strain Harrington) 1 1 1.00 103911 Echovirus 22 (strain Harris) 1 1 1.00 103913 Echovirus 6 strain Charles 1 1 1.00 103914 Echovirus 9 (strain Barty) 1 1 1.00 103915 Echovirus 9 (strain Hill) 1 1 1.00 103921 Herpes simplex virus (type 2 / strain B4327UR) 1 1 1.00 103922 Human enterovirus 71 (strain 7423/MS/87) 1 1 1.00 103926 Peanut mottle virus (strain M) 3 2 0.67 103927 Plum pox virus SK 68 2 1 0.50 103929 Rabies virus strain Pasteur vaccin 5 5 1.00 103931 Soybean mosaic virus G2 2 1 0.50 106370 Frankia sp. CcI3 4448 3110 0.70 107411 Influenza B virus (B/Ibaraki/2/85) 6 6 1.00 107412 Influenza B virus (B/Lee/40) 30 30 1.00 107417 Influenza B virus (B/Singapore/222/79) 10 10 1.00 107806 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 574 560 0.98 109049 Influenza A virus (A/Niigata/137/96 (H3N2)) 1 1 1.00 110662 Synechococcus sp. CC9605 2634 1772 0.67 113370 Spodoptera frugiperda ascovirus 1a 149 39 0.26 114102 Frog adenovirus 1 23 14 0.61 114430 Ovine adenovirus 7 31 18 0.58 114615 Bradyrhizobium sp. ORS 278 6711 5028 0.75 114921 Beet mosaic virus 11 10 0.91 117128 Zucchini yellow mosaic virus (strain California) 2 1 0.50 117129 Zucchini yellow mosaic virus (strain Reunion Island) 2 1 0.50 117130 Zucchini yellow mosaic virus (strain Singapore) 2 1 0.50 117131 Lettuce mosaic virus (strain E) 2 1 0.50 117132 Lettuce mosaic virus (strain 0 / French isolate) 2 1 0.50 117138 Brome streak virus (strain 11-Cal) 1 1 1.00 121224 Pediculus humanus corporis 10847 7751 0.71 121791 Nipah virus 89 28 0.31 122961 HPeV 5 strain CT86-6760 1 1 1.00 122962 Echovirus 23 strain Williamson 1 1 1.00 123214 Persephonella marina EX-H1 2051 1557 0.76 123735 Tomato yellow leaf curl Sardinia virus 150 130 0.87 126070 Columbid circovirus 71 39 0.55 126740 Thermotoga sp. RQ2 1897 1632 0.86 126793 Plasmodium vivax SaI-1 5393 3202 0.59 126794 Vaccinia virus Ankara 293 266 0.91 126796 Thogoto virus (isolate SiAr 126) 7 4 0.57 127957 Influenza C virus (C/Nara/2/85) 16 16 1.00 127958 Influenza C virus (C/Yamagata/4/88) 1 1 1.00 128947 Zaire ebolavirus - Gabon (1994-1997) 5 5 1.00 128948 Sudan ebolavirus - Boniface (1976) 3 3 1.00 128949 Sudan ebolavirus - Maleo (1979) 3 3 1.00 128951 Zaire ebolavirus - Zaire (1995) 10 10 1.00 128952 Ebola virus - Mayinga, Zaire, 1976 9 9 1.00 128999 Tai Forest virus - Cote d'Ivoire, Cote d'Ivoire, 1994 2 2 1.00 129000 Zaire ebolavirus - Eckron (Zaire, 1976) 2 2 1.00 129003 Reston ebolavirus - Reston 33 33 1.00 129004 Reston ebolavirus - Siena/Philippine-92 2 2 1.00 129724 Human papillomavirus type 82 20 20 1.00 130763 Influenza A virus (A/Hong Kong/156/97(H5N1)) 12 12 1.00 132475 Yaba-like disease virus 150 131 0.87 132484 Measles virus strain Moraten 8 8 1.00 132487 Measles virus strain Schwarz 8 8 1.00 132504 Influenza A virus (A/X-31(H3N2)) 15 15 1.00 137722 Azospirillum sp. B510 6092 5002 0.82 138119 Desulfitobacterium hafniense Y51 5022 3957 0.79 138309 Tobacco mosaic virus strain B395A 3 3 1.00 138310 Tobacco mosaic virus strain Rakkyo 3 3 1.00 138311 Tomato mosaic virus (strain Kazakh K1) 3 3 1.00 138312 Tomato mosaic virus (strain Kazakh K2) 3 3 1.00 138314 Tomato mosaic virus (strain S-1) 3 3 1.00 138661 Odontoglossum ringspot virus (isolate Korean Cy) 5 5 1.00 138662 Odontoglossum ringspot virus (isolate Singapore 1) 4 4 1.00 138663 Pepper mild mottle virus (strain Japan) 3 3 1.00 142661 Canary circovirus 3 3 1.00 142804 Rice dwarf virus (isolate Fujian) 12 5 0.42 144752 Allpahuayo virus 6 6 1.00 145481 Physcomitrella patens subsp. patens 34927 15520 0.44 145579 Bdellovibrio phage phiMH2K 11 2 0.18 146032 Goose circovirus 48 28 0.58 146891 Prochlorococcus marinus str. AS9601 1921 1359 0.71 150340 Vibrio sp. Ex25 5352 4337 0.81 152794 Corynebacterium efficiens 2955 2169 0.73 155892 Caulobacter vibrioides 3792 2945 0.78 156889 Magnetococcus sp. MC-1 3594 2575 0.72 157898 Sulfolobus islandicus rod-shaped virus 1 77 23 0.30 158878 Staphylococcus aureus subsp. aureus Mu50 2716 2217 0.82 158879 Staphylococcus aureus subsp. aureus N315 2581 2149 0.83 159087 Dechloromonas aromatica RCB 4155 3336 0.80 160488 Pseudomonas putida KT2440 5313 4327 0.81 160491 Streptococcus pyogenes str. Manfredo 1736 1434 0.83 163164 Wolbachia endosymbiont of Drosophila melanogaster 1180 795 0.67 164546 Cupriavidus taiwanensis 5871 4662 0.79 164756 Mycobacterium sp. MCS 5591 4258 0.76 164757 Mycobacterium sp. JLS 5697 4431 0.78 167539 Prochlorococcus marinus subsp. marinus str. CCMP1375 1882 1353 0.72 167542 Prochlorococcus marinus str. MIT 9515 1901 1351 0.71 167546 Prochlorococcus marinus str. MIT 9301 1906 1352 0.71 167555 Prochlorococcus marinus str. NATL1A 2180 1394 0.64 167879 Colwellia psychrerythraea 34H 4872 3485 0.72 171101 Streptococcus pneumoniae R6 2029 1635 0.81 173976 Cycas necrotic stunt virus 4 4 1.00 175814 Cestrum yellow leaf curling virus 7 4 0.57 176279 Staphylococcus epidermidis RP62A 2492 1901 0.76 176280 Staphylococcus epidermidis ATCC 12228 2462 1919 0.78 176283 Echovirus 5 (strain Noyce) 1 1 1.00 176284 Echovirus 30 (strain Bastianni) 1 1 1.00 176299 Agrobacterium tumefaciens str. C58 5358 4369 0.82 176652 Invertebrate iridescent virus 6 469 76 0.16 176674 Influenza A virus (A/Duck/Hong Kong/2986.1/2000(H5N1)) 11 11 1.00 177416 Francisella tularensis subsp. tularensis SCHU S4 1528 1212 0.79 177437 Desulfobacterium autotrophicum HRM2 4846 3694 0.76 178306 Pyrobaculum aerophilum str. IM2 2590 1608 0.62 183190 Xylella fastidiosa Temecula1 2007 1576 0.79 184922 Giardia lamblia ATCC 50803 7156 2589 0.36 185783 Golden shiner reovirus 12 6 0.50 185793 Tomato yellow leaf curl China virus 123 113 0.92 185959 Spiroplasma phage 1-C74 13 5 0.38 186460 Influenza A virus (A/swine/New Jersey/11/1976(H1N1)) 2 2 1.00 186497 Pyrococcus furiosus DSM 3638 2050 1583 0.77 186769 Cryphonectria parasitica mitovirus 1-NB631 1 1 1.00 186772 Saccharomyces 20S RNA narnavirus 1 0 0.00 187272 Alkalilimnicola ehrlichii MLHE-1 2862 2417 0.84 187420 Methanothermobacter thermautotrophicus str. Delta H 1872 1467 0.78 188937 Methanosarcina acetivorans C2A 4468 3120 0.70 189518 Leptospira interrogans serovar Lai str. 56601 3676 2350 0.64 189918 Mycobacterium sp. KMS 5894 4420 0.75 190192 Methanopyrus kandleri AV19 1688 1206 0.71 190239 Calicivirus strain NB 8 7 0.88 190304 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 2046 1565 0.76 191547 Beet ringspot virus 3 2 0.67 192848 Bear Canyon virus 17 16 0.94 192952 Methanosarcina mazei Go1 3304 2460 0.74 193567 Streptococcus pyogenes SSI-1 1852 1480 0.80 194966 Enterobacteria phage SP6 65 18 0.28 195099 Campylobacter jejuni RM1221 1836 1340 0.73 195103 Clostridium perfringens ATCC 13124 2873 2231 0.78 196162 Nocardioides sp. JS614 4905 3677 0.75 196398 Southern cowpea mosaic virus 7 5 0.71 196426 Influenza A virus (A/Chicken/Hong Kong/YU562/01 (H5N1)) 11 11 1.00 196428 Influenza A virus (A/Chicken/Hong Kong/FY150/01 (H5N1)) 11 11 1.00 196430 Influenza A virus (A/Silky Chicken/Hong Kong/SF189/01 (H5N1)) 11 11 1.00 196434 Influenza A virus (A/Chicken/Hong Kong/715.5/01 (H5N1)) 11 11 1.00 196600 Vibrio vulnificus YJ016 4990 3749 0.75 196620 Staphylococcus aureus subsp. aureus MW2 2660 2174 0.82 197221 Thermosynechococcus elongatus BP-1 2451 1944 0.79 198599 Saccharomyces 23S RNA narnavirus 1 0 0.00 198628 Dickeya dadantii 3937 4532 3673 0.81 198804 Buchnera aphidicola str. Sg (Schizaphis graminum) 562 549 0.98 203119 Clostridium thermocellum ATCC 27405 3105 2373 0.76 203120 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2002 1610 0.80 203122 Saccharophagus degradans 2-40 4000 3019 0.75 203123 Oenococcus oeni PSU-1 1687 1339 0.79 203124 Trichodesmium erythraeum IMS101 4354 2920 0.67 203224 Influenza C virus (C/California/78) 9 9 1.00 203225 Influenza C virus (C/Hyogo/1/83) 5 5 1.00 203229 Influenza C virus (C/Mississippi/80) 11 11 1.00 203231 Influenza C virus (C/pig/Beijing/115/81) 10 10 1.00 203232 Influenza C virus (C/Nara/82) 16 16 1.00 203233 Influenza C virus (C/Kyoto/41/82) 10 10 1.00 203267 Tropheryma whipplei str. Twist 805 661 0.82 203907 Candidatus Blochmannia floridanus 589 576 0.98 204536 Sulfurihydrogenibium azorense Az-Fu1 1708 1381 0.81 204669 Candidatus Koribacter versatilis Ellin345 4771 3313 0.69 204722 Brucella suis 1330 3282 2499 0.76 204773 Herminiimonas arsenicoxydans 3286 2584 0.79 205913 Bifidobacterium longum DJO10A 1980 1484 0.75 205914 Haemophilus somnus 129PT 1793 1542 0.86 205918 Pseudomonas syringae pv. syringae B728a 5072 4143 0.82 205920 Ehrlichia chaffeensis str. Arkansas 1100 724 0.66 205922 Pseudomonas fluorescens Pf0-1 5714 4653 0.81 206672 Bifidobacterium longum NCC2705 1725 1369 0.79 207559 Desulfovibrio alaskensis G20 3220 2565 0.80 208899 Cupixi virus 4 4 1.00 208963 Pseudomonas aeruginosa UCBPP-PA14 5886 4812 0.82 208964 Pseudomonas aeruginosa PAO1 5577 4669 0.84 211044 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 33 33 1.00 211977 Aravan virus 6 6 1.00 212035 Acanthamoeba polyphaga mimivirus 2144 845 0.39 212042 Anaplasma phagocytophilum HZ 1330 766 0.58 214684 Cryptococcus neoformans var. neoformans JEC21 6436 4800 0.75 215689 Erwinia sp. Ejp617 3632 2923 0.80 216389 Dehalococcoides sp. BAV1 1370 1061 0.77 216466 Streptococcus agalactiae serogroup V 2105 1690 0.80 216495 Streptococcus agalactiae serogroup III 2002 1675 0.84 216591 Burkholderia cenocepacia J2315 6993 5615 0.80 216592 Escherichia coli 042 4884 4181 0.86 216594 Mycobacterium marinum M 5424 4171 0.77 216595 Pseudomonas fluorescens SBW25 6435 4969 0.77 216596 Rhizobium leguminosarum bv. viciae 3841 7110 5637 0.79 216597 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 4433 3936 0.89 217166 Influenza C virus (C/Yamagata/64) 5 5 1.00 217828 Influenza A virus (A/equine/Sao Paulo/1/76(H7N7)) 1 1 1.00 217829 Influenza A virus (A/equine/Switzerland/137/72(H7N7)) 1 1 1.00 217831 Influenza A virus (A/equine/Newmarket/1/77(H7N7)) 5 5 1.00 217834 Influenza A virus (A/equine/Detroit/1/64(H7N7)) 1 1 1.00 217835 Influenza A virus (A/equine/Cambridge/1/73(H7N7)) 1 1 1.00 217836 Influenza A virus (A/equine/C.Detroit/1/64(H7N7)) 1 1 1.00 217837 Influenza A virus (A/equine/Cambridge/1/63(H7N7)) 1 1 1.00 217992 Escherichia coli O6 5336 4160 0.78 218493 Salmonella bongori NCTC 12419 3853 3477 0.90 218494 Streptococcus suis P1/7 1814 1534 0.85 218495 Streptococcus uberis 0140J 1760 1524 0.87 218496 Tropheryma whipplei TW08/27 781 658 0.84 219688 Mink astrovirus 17 6 0.35 220664 Pseudomonas fluorescens Pf-5 6108 5007 0.82 220668 Lactobacillus plantarum WCFS1 3088 2428 0.79 221016 Influenza A virus (A/Queensland/7/70(H3N2)) 10 10 1.00 221109 Oceanobacillus iheyensis HTE831 3490 2872 0.82 221538 Tomato yellow leaf curl Sardinia virus-[Spain2] 6 6 1.00 221988 Mannheimia succiniciproducens MBEL55E 2367 1886 0.80 222073 African cassava mosaic virus - [Nigeria] 8 8 1.00 222448 Bean golden yellow mosaic virus-[Puerto Rico] 7 7 1.00 222449 Bean golden yellow mosaic virus-[Puerto Rico-Japan] 2 1 0.50 222523 Bacillus cereus ATCC 10987 5834 4058 0.70 222891 Neorickettsia sennetsu str. Miyayama 932 606 0.65 222929 Coccidioides posadasii C735 delta SOWgp 7226 5381 0.74 223283 Pseudomonas syringae pv. tomato str. DC3000 5432 4245 0.78 223295 Mungbean yellow mosaic virus-Vigna 12 11 0.92 223303 Pepper huasteco yellow vein virus 23 23 1.00 223310 Potato yellow mosaic virus - [Venezuela] 7 7 1.00 223341 Tomato golden mosaic virus-Yellow vein 7 7 1.00 223353 Tomato leaf curl virus-[AU] 7 7 1.00 224324 Aquifex aeolicus VF5 1553 1330 0.86 224325 Archaeoglobus fulgidus DSM 4304 2398 1852 0.77 224914 Brucella melitensis bv. 1 str. 16M 4966 4073 0.82 224915 Buchnera aphidicola str. Bp (Baizongia pistaciae) 507 496 0.98 225849 Shewanella piezotolerans WP3 4923 3496 0.71 226186 Bacteroides thetaiotaomicron VPI-5482 4782 3393 0.71 226900 Bacillus cereus ATCC 14579 5255 3897 0.74 227321 Aspergillus nidulans FGSC A4 12699 9078 0.71 227859 SARS coronavirus 53 45 0.85 228400 Haemophilus somnus 2336 1972 1666 0.84 228405 Hyphomonas neptunium ATCC 15444 3499 2700 0.77 228908 Nanoarchaeum equitans Kin4-M 536 348 0.65 229032 Porcine epidemic diarrhea virus (strain CV777) 7 7 1.00 230236 Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) 8 7 0.88 230237 Porcine hemagglutinating encephalomyelitis virus (strain 67N) 8 7 0.88 230285 Influenza B virus (B/Bonn/43) 1 1 1.00 230286 Influenza B virus (B/USSR/100/83) 3 3 1.00 230407 Cryphonectria parasitica mycoreovirus-1 (9B21) 11 0 0.00 231417 Coxsackievirus A16 (strain Tainan/5079/98) 1 1 1.00 231473 Coxsackievirus B2 (strain Ohio-1) 1 1 1.00 231474 Coxsackievirus B6 (strain Schmitt) 1 1 1.00 232721 Acidovorax sp. JS42 4046 3219 0.80 233262 Bovine enteric coronavirus (strain 98TXSF-110-ENT) 12 12 1.00 233264 Bovine respiratory coronavirus (strain 98TXSF-110-LUN) 12 12 1.00 233412 Haemophilus ducreyi 35000HP 1694 1317 0.78 234267 Candidatus Solibacter usitatus Ellin6076 7761 5340 0.69 234601 Sapovirus Mc10 2 2 1.00 234621 Rhodococcus erythropolis PR4 6424 4797 0.75 234826 Anaplasma marginale str. St. Maries 970 760 0.78 234831 Pseudoalteromonas sp. SM9913 3710 2906 0.78 235279 Helicobacter hepaticus ATCC 51449 1872 1290 0.69 235909 Geobacillus kaustophilus HTA426 3516 2756 0.78 237561 Candida albicans SC5314 9120 5407 0.59 237631 Ustilago maydis 521 6553 4620 0.71 237895 Cryptosporidium hominis 4380 2242 0.51 240015 Acidobacterium capsulatum ATCC 51196 3363 2423 0.72 240176 Coprinopsis cinerea okayama7#130 13346 6576 0.49 240292 Anabaena variabilis ATCC 29413 5643 3941 0.70 242231 Neisseria gonorrhoeae FA 1090 1963 1450 0.74 242507 Magnaporthe oryzae 70-15 13295 7297 0.55 242619 Porphyromonas gingivalis W83 1864 1338 0.72 243090 Rhodopirellula baltica SH 1 7271 3519 0.48 243159 Acidithiobacillus ferrooxidans ATCC 23270 3120 2103 0.67 243164 Dehalococcoides ethenogenes 195 1502 1106 0.74 243231 Geobacter sulfurreducens PCA 3418 2655 0.78 243232 Methanocaldococcus jannaschii DSM 2661 1787 1402 0.78 243233 Methylococcus capsulatus str. Bath 2925 2275 0.78 243243 Mycobacterium avium 104 5040 3748 0.74 243265 Photorhabdus luminescens subsp. laumondii TTO1 4556 3471 0.76 243272 Mycoplasma arthritidis 158L3-1 631 422 0.67 243273 Mycoplasma genitalium G37 484 406 0.84 243275 Treponema denticola ATCC 35405 2753 1741 0.63 243276 Treponema pallidum subsp. pallidum str. Nichols 1033 746 0.72 244589 Sulfolobus virus 1 34 9 0.26 246194 Carboxydothermus hydrogenoformans Z-2901 2615 2011 0.77 246195 Dichelobacter nodosus VCS1703A 1273 1076 0.85 246196 Mycobacterium smegmatis str. MC2 155 6641 5054 0.76 246197 Myxococcus xanthus DK 1622 7324 4609 0.63 246200 Ruegeria pomeroyi DSS-3 4247 3477 0.82 246343 Turkey astrovirus 2 288 280 0.97 247156 Nocardia farcinica IFM 10152 5943 4140 0.70 249583 Irkut virus 5 5 1.00 251221 Gloeobacter violaceus PCC 7421 4409 3144 0.71 254945 Ehrlichia ruminantium str. Welgevonden 1123 859 0.76 255470 Dehalococcoides sp. CBDB1 1483 1106 0.75 257310 Bordetella bronchiseptica RB50 4967 4268 0.86 257314 Lactobacillus johnsonii NCC 533 1809 1467 0.81 257363 Rickettsia typhi str. Wilmington 836 724 0.87 258594 Rhodopseudomonas palustris CGA009 4811 3861 0.80 259536 Psychrobacter arcticus 273-4 2099 1746 0.83 259564 Methanococcoides burtonii DSM 6242 2242 1706 0.76 260717 Human papillomavirus type 94 23 22 0.96 260797 Heliothis virescens ascovirus 3e 179 51 0.28 261292 Nitrosomonas sp. Is79A3 3273 2338 0.71 261991 Hepatitis delta virus (isolate US-2) 2 2 1.00 261992 Hepatitis delta virus (isolate TW2476) 2 2 1.00 261993 Hepatitis delta virus (isolate VnzD8624) 2 2 1.00 261994 Hepatitis delta virus (isolate VnzD8349) 2 2 1.00 261995 Hepatitis delta virus (isolate VnzD8375) 2 2 1.00 261996 Hepatitis delta virus (isolate Peru-1) 2 2 1.00 262177 Orgyia pseudotsugata MNPV 155 113 0.73 262398 Human herpesvirus 7 strain RK 1 0 0.00 262543 Exiguobacterium sibiricum 255-15 3006 2372 0.79 262698 Brucella abortus bv. 1 str. 9-941 3077 2397 0.78 262719 Mycoplasma hyopneumoniae J 671 448 0.67 262722 Mycoplasma hyopneumoniae 7448 694 447 0.64 262723 Mycoplasma synoviae 53 679 463 0.68 262724 Thermus thermophilus HB27 2200 1770 0.80 262728 Haemophilus influenzae R2866 1793 1601 0.89 262768 Onion yellows phytoplasma OY-M 730 505 0.69 263820 Picrophilus torridus DSM 9790 1535 1199 0.78 264198 Ralstonia eutropha JMP134 6454 5360 0.83 264199 Streptococcus thermophilus LMG 18311 1585 1324 0.84 264201 Candidatus Protochlamydia amoebophila UWE25 2024 1238 0.61 264202 Chlamydophila felis Fe/C-56 1013 746 0.74 264462 Bdellovibrio bacteriovorus HD100 3583 2243 0.63 264730 Pseudomonas syringae pv. phaseolicola 1448A 5045 4096 0.81 264731 Prevotella ruminicola 23 2761 2038 0.74 264732 Moorella thermoacetica ATCC 39073 2451 2079 0.85 265072 Methylobacillus flagellatus KT 2609 2163 0.83 265311 Mesoplasma florum L1 683 533 0.78 265669 Listeria monocytogenes serotype 4b str. F2365 2818 2293 0.81 265871 Cowpox virus (strain GRI-90) 19 19 1.00 265872 Cowpox virus (Brighton Red) 17 17 1.00 266117 Rubrobacter xylanophilus DSM 9941 3127 2589 0.83 266264 Cupriavidus metallidurans CH34 6480 4893 0.76 266265 Burkholderia xenovorans LB400 8592 6684 0.78 266779 Chelativorans sp. BNC1 4530 3664 0.81 266834 Sinorhizobium meliloti 1021 6169 5032 0.82 266835 Mesorhizobium loti MAFF303099 7255 5501 0.76 266940 Kineococcus radiotolerans SRS30216 4674 3395 0.73 267377 Methanococcus maripaludis S2 1722 1439 0.84 267407 European mountain ash ringspot-associated virus 11 1 0.09 267608 Ralstonia solanacearum GMI1000 5022 3856 0.77 267671 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 3654 2298 0.63 267747 Propionibacterium acnes KPA171202 2294 1772 0.77 267748 Mycoplasma mobile 163K 628 464 0.74 268305 Bovine viral diarrhea virus 1-CP7 1 1 1.00 268331 Maize streak virus - E[Pat] 4 4 1.00 268343 Maize streak virus - [Raw] 4 4 1.00 268344 Maize streak virus - [Set] 4 4 1.00 268409 Maize streak virus - B[Tas] 5 4 0.80 268776 Miscanthus streak virus - [91] 5 3 0.60 268780 Panicum streak virus - [Kenya] 4 4 1.00 268781 Sugarcane streak virus - [Natal] 4 4 1.00 268789 Wheat dwarf virus - [Sweden] 4 4 1.00 268960 Beet curly top virus - California [Logan] 9 9 1.00 269084 Synechococcus elongatus PCC 6301 2555 2031 0.79 269446 Rous sarcoma virus (strain Schmidt-Ruppin A) 5 4 0.80 269482 Burkholderia vietnamiensis G4 7410 5305 0.72 269483 Burkholderia sp. 383 7715 6165 0.80 269484 Ehrlichia canis str. Jake 921 723 0.79 269796 Rhodospirillum rubrum ATCC 11170 3835 3161 0.82 269797 Methanosarcina barkeri str. Fusaro 3616 2692 0.74 269798 Cytophaga hutchinsonii ATCC 33406 3771 2396 0.64 269799 Geobacter metallireducens GS-15 3467 2769 0.80 269800 Thermobifida fusca YX 3085 2369 0.77 271065 Methylomicrobium alcaliphilum 4053 3030 0.75 271848 Burkholderia thailandensis E264 5563 4527 0.81 272557 Aeropyrum pernix K1 1701 1211 0.71 272558 Bacillus halodurans C-125 4006 3146 0.79 272559 Bacteroides fragilis NCTC 9343 4234 2870 0.68 272563 Clostridium difficile 630 3784 2997 0.79 272564 Desulfitobacterium hafniense DCB-2 4852 3817 0.79 272568 Gluconacetobacter diazotrophicus PAl 5 5905 4405 0.75 272569 Haloarcula marismortui ATCC 43049 4237 2642 0.62 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 5126 4468 0.87 272621 Lactobacillus acidophilus NCFM 1859 1488 0.80 272622 Lactococcus lactis subsp. cremoris SK11 2442 1887 0.77 272623 Lactococcus lactis subsp. lactis Il1403 2225 1806 0.81 272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 2949 2134 0.72 272630 Methylobacterium extorquens AM1 6234 3949 0.63 272632 Mycoplasma mycoides subsp. mycoides SC str. PG1 978 666 0.68 272633 Mycoplasma penetrans HF-2 1028 680 0.66 272634 Mycoplasma pneumoniae M129 687 539 0.78 272635 Mycoplasma pulmonis UAB CTIP 778 530 0.68 272831 Neisseria meningitidis FAM18 1865 1518 0.81 272843 Pasteurella multocida subsp. multocida str. Pm70 2015 1806 0.90 272844 Pyrococcus abyssi GE5 1788 1490 0.83 272942 Rhodobacter capsulatus SB 1003 3632 2834 0.78 272943 Rhodobacter sphaeroides 2.4.1 4244 3400 0.80 272944 Rickettsia conorii str. Malish 7 1372 868 0.63 272947 Rickettsia prowazekii str. Madrid E 835 731 0.88 273036 Staphylococcus aureus RF122 2513 2048 0.81 273057 Sulfolobus solfataricus P2 2941 2100 0.71 273063 Sulfolobus tokodaii str. 7 2805 1896 0.68 273068 Thermoanaerobacter tengcongensis MB4 2545 2078 0.82 273075 Thermoplasma acidophilum DSM 1728 1483 1172 0.79 273116 Thermoplasma volcanium GSS1 1524 1180 0.77 273119 Ureaplasma parvum serovar 3 str. ATCC 700970 611 422 0.69 277944 Human coronavirus NL63 401 191 0.48 278137 Mycobacterium sp. Spyr1 5225 3962 0.76 278197 Pediococcus pentosaceus ATCC 25745 1755 1435 0.82 279010 Bacillus licheniformis ATCC 14580 4676 3712 0.79 279238 Novosphingobium aromaticivorans DSM 12444 3917 3018 0.77 279794 Influenza A virus (A/HK/212/03 (H5N1)) 11 11 1.00 279803 Influenza A virus (A/Ck/HK/96.1/02 (H5N1)) 11 11 1.00 279808 Staphylococcus haemolyticus JCSC1435 2640 2076 0.79 281090 Leifsonia xyli subsp. xyli str. CTCB07 2001 1493 0.75 281309 Bacillus thuringiensis serovar konkukian str. 97-27 5169 3934 0.76 281310 Haemophilus influenzae 86-028NP 1792 1553 0.87 281921 Raspberry ringspot virus strain cherry 2 2 1.00 282063 Arabis mosaic virus strain NW 2 2 1.00 282458 Staphylococcus aureus subsp. aureus MRSA252 2640 2135 0.81 282459 Staphylococcus aureus subsp. aureus MSSA476 2602 2131 0.82 283165 Bartonella quintana str. Toulouse 1146 997 0.87 283166 Bartonella henselae str. Houston-1 1481 1156 0.78 283643 Cryptococcus neoformans var. neoformans B-3501A 6570 4901 0.75 283942 Idiomarina loihiensis L2TR 2608 2213 0.85 284169 Influenza A virus (A/Ck/HK/31.2/2002(H5N1)) 11 11 1.00 284172 Influenza A virus (A/Ck/HK/37.4/2002(H5N1)) 11 11 1.00 284177 Influenza A virus (A/Ck/HK/YU22/2002(H5N1)) 11 11 1.00 284184 Influenza A virus (A/Ck/ST/4231/2003(H5N1)) 11 11 1.00 284208 Influenza A virus (A/Gf/HK/38/2002(H5N1)) 11 11 1.00 284214 Influenza A virus (A/SCk/HK/YU100/2002(H5N1)) 11 11 1.00 284215 Influenza A virus (A/teal/China/2978.1/2002(H5N1)) 11 11 1.00 284590 Kluyveromyces lactis NRRL Y-1140 5071 4063 0.80 284591 Yarrowia lipolytica CLIB122 6415 4828 0.75 284592 Debaryomyces hansenii CBS767 6243 4744 0.76 284593 Candida glabrata CBS 138 5197 4189 0.81 284811 Ashbya gossypii ATCC 10895 4761 3864 0.81 284812 Schizosaccharomyces pombe 972h- 5083 4304 0.85 284813 Encephalitozoon cuniculi GB-M1 1910 1281 0.67 285006 Saccharomyces cerevisiae RM11-1a 5357 4292 0.80 288000 Bradyrhizobium sp. BTAi1 7570 5708 0.75 288681 Bacillus cereus E33L 5638 4203 0.75 288705 Renibacterium salmoninarum ATCC 33209 3421 2468 0.72 289376 Thermodesulfovibrio yellowstonii DSM 11347 1982 1647 0.83 289380 Clostridium perfringens SM101 2558 2041 0.80 289397 Mycoplasma bovis PG45 742 525 0.71 290008 Isfahan virus 5 5 1.00 290315 Chlorobium limicola DSM 245 2419 1851 0.77 290317 Chlorobium phaeobacteroides DSM 266 2579 1921 0.74 290318 Chlorobium phaeovibrioides DSM 265 1750 1455 0.83 290338 Citrobacter koseri ATCC BAA-895 5019 3850 0.77 290339 Cronobacter sakazakii ATCC BAA-894 4421 3541 0.80 290340 Arthrobacter aurescens TC1 4565 3481 0.76 290397 Anaeromyxobacter dehalogenans 2CP-C 4345 3159 0.73 290398 Chromohalobacter salexigens DSM 3043 3302 2873 0.87 290399 Arthrobacter sp. FB24 4453 3435 0.77 290400 Jannaschia sp. CCS1 4271 3308 0.77 290402 Clostridium beijerinckii NCIMB 8052 5003 3991 0.80 290512 Prosthecochloris aestuarii DSM 271 2319 1797 0.77 290579 HIV-1 M:B_Lai 1 1 1.00 290633 Gluconobacter oxydans 621H 2626 2014 0.77 290650 TT virus genotype 6 6 4 0.67 290847 Helicobacter pylori 51 1412 1119 0.79 291175 Sapovirus Hu/Dresden/pJG-Sap01/DE 3 3 1.00 291272 Candidatus Blochmannia pennsylvanicus str. BPEN 610 596 0.98 291603 Faba bean necrotic yellows virus (isolate Egyptian EV1-93) 11 6 0.55 291604 Faba bean necrotic yellows virus (isolate SV292-88) 13 6 0.46 291605 Milk vetch dwarf virus (isolate 1) 12 7 0.58 291607 Subterranean clover stunt virus (strain F) 8 5 0.63 291795 Influenza B virus (B/Paris/329/90) 1 1 1.00 291796 Influenza B virus (B/Hong Kong/9/89) 1 1 1.00 291797 Influenza B virus (B/Hong Kong/22/89) 1 1 1.00 291798 Influenza B virus (B/Bangkok/163/90) 1 1 1.00 291799 Influenza B virus (B/Texas/1/91) 1 1 1.00 291800 Influenza B virus (B/Texas/4/90) 1 1 1.00 291801 Influenza B virus (B/New York/3/90) 1 1 1.00 291802 Influenza B virus (B/Guangdong/55/89) 1 1 1.00 291803 Influenza B virus (B/Victoria/103/89) 1 1 1.00 291804 Influenza B virus (B/Victoria/19/89) 1 1 1.00 291805 Influenza B virus (B/South Dakota/5/89) 1 1 1.00 291806 Influenza B virus (B/India/3/89) 1 1 1.00 292349 Feline calicivirus (strain Urbana) 3 3 1.00 292414 Ruegeria sp. TM1040 3849 3099 0.81 292415 Thiobacillus denitrificans ATCC 25259 2826 2285 0.81 292805 Wolbachia endosymbiont strain TRS of Brugia malayi 805 606 0.75 293613 Rickettsia canadensis str. McKiel 1091 743 0.68 293614 Rickettsia akari str. Hartford 1257 806 0.64 293826 Alkaliphilus metalliredigens QYMF 4467 3326 0.74 294746 Meyerozyma guilliermondii ATCC 6260 5919 4619 0.78 294747 Candida tropicalis MYA-3404 6226 4623 0.74 294748 Candida albicans WO-1 5742 4305 0.75 295027 Human herpesvirus 5 strain Merlin 170 102 0.60 295358 Mycoplasma hyopneumoniae 232 691 443 0.64 295405 Bacteroides fragilis YCH46 4597 2912 0.63 296587 Micromonas sp. RCC299 10115 6561 0.65 296591 Polaromonas sp. JS666 5439 4308 0.79 297245 Legionella pneumophila str. Lens 2919 2109 0.72 297246 Legionella pneumophila str. Paris 3147 2236 0.71 298339 Pan troglodytes foamy virus 20 5 0.25 298653 Frankia sp. EAN1pec 7134 4959 0.70 298654 Frankia sp. EuI1c 7079 5196 0.73 299386 Equine arteritis virus Bucyrus 8 7 0.88 299768 Streptococcus thermophilus CNRZ1066 1590 1318 0.83 300267 Shigella dysenteriae Sd197 3897 3369 0.86 300268 Shigella boydii Sb227 3938 3448 0.88 300269 Shigella sonnei Ss046 4068 3654 0.90 300852 Thermus thermophilus HB8 2236 1779 0.80 300880 Swinepox virus (strain 17077-99) 146 130 0.89 301352 Vaccinia virus Tashkent 1 1 1.00 301447 Streptococcus pyogenes serotype M1 2308 1820 0.79 301448 Streptococcus pyogenes serotype M3 1862 1512 0.81 301450 Streptococcus pyogenes serotype M6 1882 1510 0.80 301451 Streptococcus pyogenes serotype M18 1837 1508 0.82 301478 Murray valley encephalitis virus (strain MVE-1-51) 1 1 1.00 302271 Sendai virus (strain Hamamatsu) 9 8 0.89 302272 Sendai virus (strain Ohita) 9 8 0.89 302409 Ehrlichia ruminantium str. Gardel 948 723 0.76 303300 Taro vein chlorosis virus 6 1 0.17 304371 Methanocella paludicola SANAE 2994 2098 0.70 305674 Deerpox virus W-848-83 165 148 0.90 306263 Campylobacter lari RM2100 1545 1239 0.80 306537 Corynebacterium jeikeium K411 2064 1634 0.79 306901 Chaetomium globosum CBS 148.51 11041 6528 0.59 306902 Clavispora lusitaniae ATCC 42720 5932 4283 0.72 307796 Saccharomyces cerevisiae YJM789 5861 4664 0.80 308444 Human adenovirus 15/H9 1 1 1.00 309798 Coprothermobacter proteolyticus DSM 5265 1481 1181 0.80 309799 Dictyoglomus thermophilum H-6-12 1913 1556 0.81 309800 Haloferax volcanii DS2 3988 2583 0.65 309801 Thermomicrobium roseum DSM 5159 2858 2054 0.72 309803 Thermotoga neapolitana DSM 4359 1939 1605 0.83 309807 Salinibacter ruber DSM 13855 2812 2107 0.75 310273 Equine herpesvirus 1 (strain V592) 74 68 0.92 311175 Influenza A virus (A/turkey/Ontario/6118/1968(H8N4)) 24 24 1.00 311176 Blotched snakehead virus 3 2 0.67 311339 Human herpesvirus 5 strain Toledo 176 102 0.58 311402 Agrobacterium vitis S4 5353 4428 0.83 311403 Agrobacterium radiobacter K84 6700 5515 0.82 311424 Dehalococcoides sp. VS 1427 1097 0.77 312017 Tetrahymena thermophila SB210 15290 5463 0.36 312153 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 2074 1764 0.85 312309 Vibrio fischeri ES114 3816 3148 0.82 314225 Erythrobacter litoralis HTCC2594 2999 2231 0.74 314275 Alteromonas macleodii str. 'Deep ecotype' 3729 2837 0.76 314315 Lactobacillus sakei subsp. sakei 23K 1872 1510 0.81 314536 Rabbit hemorrhagic disease virus-FRG 2 2 1.00 314538 Rabbit hemorrhagic disease virus-AST89 2 2 1.00 314565 Xanthomonas campestris pv. campestris str. 8004 4249 3283 0.77 314723 Borrelia hermsii DAH 885 686 0.78 314724 Borrelia turicatae 91E135 822 639 0.78 315277 Chlamydia trachomatis A/HAR-13 917 687 0.75 315456 Rickettsia felis URRWXCal2 1428 1044 0.73 315730 Bacillus weihenstephanensis KBAB4 5650 4131 0.73 315749 Bacillus cytotoxicus NVH 391-98 3841 2964 0.77 315750 Bacillus pumilus SAFR-032 3676 2937 0.80 315953 Acidianus two-tailed virus 72 16 0.22 316055 Rhodopseudomonas palustris BisA53 4851 3690 0.76 316056 Rhodopseudomonas palustris BisB18 4864 3766 0.77 316057 Rhodopseudomonas palustris BisB5 4392 3432 0.78 316058 Rhodopseudomonas palustris HaA2 4680 3739 0.80 316067 Geobacter sp. FRC-32 3797 2897 0.76 316273 Xanthomonas campestris pv. vesicatoria str. 85-10 4629 3432 0.74 316274 Herpetosiphon aurantiacus DSM 785 5254 3645 0.69 316275 Aliivibrio salmonicida LFI1238 3516 2919 0.83 316278 Synechococcus sp. RCC307 2528 1742 0.69 316279 Synechococcus sp. CC9902 2301 1688 0.73 316385 Escherichia coli str. K-12 substr. DH10B 3990 3614 0.91 316401 Escherichia coli ETEC H10407 4819 4151 0.86 317025 Thiomicrospira crunogena XCL-2 2187 1841 0.84 317655 Sphingopyxis alaskensis RB2256 3186 2506 0.79 318161 Shewanella denitrificans OS217 3727 2952 0.79 318167 Shewanella frigidimarina NCIMB 400 3990 3270 0.82 318586 Paracoccus denitrificans PD1222 5019 3978 0.79 319224 Shewanella putrefaciens CN-32 3948 3227 0.82 319225 Chlorobium luteolum DSM 273 2075 1688 0.81 319700 Streptococcus pyogenes serotype M28 1884 1486 0.79 319795 Deinococcus geothermalis DSM 11300 3006 2322 0.77 320372 Burkholderia pseudomallei 1710b 6329 4616 0.73 320373 Burkholderia pseudomallei 668 7102 4598 0.65 320388 Burkholderia mallei SAVP1 4981 3495 0.70 320389 Burkholderia mallei NCTC 10247 5182 3644 0.70 320483 Anaplasma marginale str. Florida 963 740 0.77 321327 Synechococcus sp. JA-3-3Ab 2748 2043 0.74 321332 Synechococcus sp. JA-2-3B'a(2-13) 2835 2106 0.74 321609 Cryphonectria hypovirus 1-Euro7 2 2 1.00 321614 Phaeosphaeria nodorum SN15 15998 7716 0.48 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1682 1239 0.74 321967 Lactobacillus casei ATCC 334 2709 2021 0.75 322098 Aster yellows witches'-broom phytoplasma AYWB 690 444 0.64 322104 Scheffersomyces stipitis CBS 6054 5797 4604 0.79 322159 Streptococcus thermophilus LMD-9 1704 1321 0.78 322710 Azotobacter vinelandii DJ 4990 3849 0.77 323097 Nitrobacter hamburgensis X14 4245 2996 0.71 323098 Nitrobacter winogradskyi Nb-255 2980 2245 0.75 323259 Methanospirillum hungatei JF-1 3087 2339 0.76 323261 Nitrosococcus oceani ATCC 19707 2995 2325 0.78 323848 Nitrosospira multiformis ATCC 25196 2732 2155 0.79 323850 Shewanella loihica PV-4 3855 3165 0.82 324057 Paenibacillus sp. JDR-2 6210 4959 0.80 324602 Chloroflexus aurantiacus J-10-fl 3850 2978 0.77 324831 Lactobacillus gasseri ATCC 33323 1696 1380 0.81 324925 Pelodictyon phaeoclathratiforme BU-1 2685 1996 0.74 325240 Shewanella baltica OS155 4223 3428 0.81 326297 Shewanella amazonensis SB2B 3638 3065 0.84 326298 Sulfurimonas denitrificans DSM 1251 2084 1643 0.79 326423 Bacillus amyloliquefaciens FZB42 3695 3075 0.83 326424 Frankia alni ACN14a 6710 4275 0.64 326426 Bifidobacterium breve UCC2003 1827 1472 0.81 326427 Chloroflexus aggregans DSM 9485 3725 2798 0.75 326442 Pseudoalteromonas haloplanktis TAC125 3485 2780 0.80 327105 HIV-1 O_ANT70 9 9 1.00 328615 Trichoplusia ni ascovirus 2c 161 43 0.27 329389 Hepatitis C virus (isolate Glasgow) 1 1 1.00 329726 Acaryochloris marina MBIC11017 8176 4503 0.55 329852 Enterobacteria phage MS2 67 66 0.99 330779 Sulfolobus acidocaldarius DSM 639 2222 1562 0.70 330879 Aspergillus fumigatus Af293 9641 6944 0.72 331111 Escherichia coli E24377A 4915 4020 0.82 331112 Escherichia coli HS 4308 3709 0.86 331117 Neosartorya fischeri NRRL 181 10392 7459 0.72 331271 Burkholderia cenocepacia AU 1054 6450 5264 0.82 331272 Burkholderia cenocepacia HI2424 6898 5559 0.81 331636 Chlamydophila psittaci 6BC 1219 868 0.71 331642 Newbury agent 1 2 1 0.50 331678 Chlorobium phaeobacteroides BS1 2434 1834 0.75 332648 Botryotinia fuckeliana B05.10 16374 6922 0.42 332952 Aspergillus flavus NRRL3357 13484 8859 0.66 333284 Hepatitis C virus (isolate Con1) 1 1 1.00 333752 Human papillomavirus type 27 6 6 1.00 333753 Human papillomavirus type 57 7 7 1.00 333759 Human papillomavirus type 10 9 9 1.00 333760 Human papillomavirus type 16 933 853 0.91 333761 Human papillomavirus type 18 230 220 0.96 333762 Human papillomavirus type 26 6 6 1.00 333763 Human papillomavirus type 32 14 14 1.00 333764 Human papillomavirus type 34 28 28 1.00 333765 Human papillomavirus type 53 192 91 0.47 333766 Human papillomavirus 54 14 14 1.00 333770 Human papillomavirus type 72 8 8 1.00 333923 Human papillomavirus type 5 56 51 0.91 334210 Human papillomavirus type 62 15 15 1.00 334380 Orientia tsutsugamushi str. Ikeda 1648 1012 0.61 334390 Lactobacillus fermentum IFO 3956 1818 1535 0.84 334413 Finegoldia magna ATCC 29328 1813 1428 0.79 335103 Adult diarrheal rotavirus strain J19 11 5 0.45 335283 Nitrosomonas eutropha C91 2473 1996 0.81 335284 Psychrobacter cryohalolentis K5 2496 2092 0.84 335541 Syntrophomonas wolfei subsp. wolfei str. Goettingen 2473 2013 0.81 335543 Syntrophobacter fumaroxidans MPOB 4012 2991 0.75 335992 Candidatus Pelagibacter ubique HTCC1062 1354 1164 0.86 336407 Rickettsia bellii RML369-C 1400 1014 0.72 336722 Mycosphaerella graminicola IPO323 10972 6767 0.62 336960 Avian nephritis virus 1 63 53 0.84 336963 Uncinocarpus reesii 1704 7760 5110 0.66 336982 Mycobacterium tuberculosis F11 3905 3101 0.79 337080 Rice tungro spherical virus (isolate Vt6) 1 1 1.00 337081 Rice tungro spherical virus (isolate A) 1 1 1.00 338187 Vibrio harveyi ATCC BAA-1116 5605 4003 0.71 338478 Macaque simian foamy virus 14 14 1.00 338565 Erwinia tasmaniensis 3626 3060 0.84 338963 Pelobacter carbinolicus DSM 2380 3341 2557 0.77 338966 Pelobacter propionicus DSM 2379 3694 2815 0.76 338969 Rhodoferax ferrireducens T118 4401 3576 0.81 339670 Burkholderia ambifaria AMMD 6600 5350 0.81 339671 Actinobacillus succinogenes 130Z 2077 1900 0.91 339724 Ajellomyces capsulatus NAm1 9252 5468 0.59 339860 Methanosphaera stadtmanae DSM 3091 1533 1174 0.77 340047 Mycoplasma capricolum subsp. capricolum ATCC 27343 814 594 0.73 340099 Thermoanaerobacter pseudethanolicus ATCC 33223 2197 1887 0.86 340100 Bordetella petrii DSM 12804 4912 4161 0.85 340102 Pyrobaculum arsenaticum DSM 13514 2296 1512 0.66 340177 Chlorobium chlorochromatii CaD3 1986 1551 0.78 340322 Corynebacterium glutamicum R 3078 2291 0.74 340907 Papiine herpesvirus 2 165 117 0.71 341663 Aspergillus terreus NIH2624 10402 7501 0.72 341946 Woodchuck hepatitis virus 2 5 5 1.00 341980 Human herpesvirus 3 strain Oka vaccine 75 71 0.95 342108 Magnetospirillum magneticum AMB-1 4516 3223 0.71 342109 Xanthomonas oryzae pv. oryzae MAFF 311018 4203 3214 0.76 342451 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 2406 1999 0.83 342610 Pseudoalteromonas atlantica T6c 4271 3462 0.81 343462 Human adenovirus 11p 4 4 1.00 343463 Human adenovirus 11a 45 43 0.96 343509 Sodalis glossinidius str. 'morsitans' 2490 2097 0.84 344609 Shigella boydii CDC 3083-94 4143 3435 0.83 344612 Aspergillus clavatus NRRL 1 9120 6633 0.73 345073 Vibrio cholerae O395 4206 3257 0.77 345184 Cabbage leal curl virus isolate Jamaica 29 29 1.00 345201 Invertebrate iridescent virus 3 126 43 0.34 347253 Streptococcus salivarius JIM8777 1978 1613 0.82 347255 Rickettsia africae ESF-5 1041 813 0.78 347256 Mycoplasma hominis ATCC 23114 529 387 0.73 347257 Mycoplasma agalactiae PG2 725 487 0.67 347834 Rhizobium etli CFN 42 5922 4746 0.80 348136 Human rotavirus B219 11 5 0.45 348780 Natronomonas pharaonis DSM 2160 2784 1902 0.68 349101 Rhodobacter sphaeroides ATCC 17029 4112 3358 0.82 349102 Rhodobacter sphaeroides ATCC 17025 4208 3311 0.79 349106 Psychrobacter sp. PRwf-1 2339 1929 0.82 349124 Halorhodospira halophila SL1 2411 2039 0.85 349161 Desulfotomaculum reducens MI-1 3220 2589 0.80 349163 Acidiphilium cryptum JF-5 3521 2831 0.80 349307 Methanosaeta thermophila PT 1673 1337 0.80 349344 Bat SARS CoV Rp3/2004 13 12 0.92 349519 Leuconostoc citreum KM20 1812 1475 0.81 349520 Paenibacillus polymyxa E681 4788 3667 0.77 349521 Hahella chejuensis KCTC 2396 6751 4418 0.65 349741 Akkermansia muciniphila ATCC BAA-835 2137 1549 0.72 349746 Yersinia pestis Angola 3821 3083 0.81 349747 Yersinia pseudotuberculosis IP 31758 4305 3428 0.80 350054 Mycobacterium gilvum PYR-GCK 5499 4169 0.76 350058 Mycobacterium vanbaalenii PYR-1 5917 4481 0.76 350688 Alkaliphilus oremlandii OhILAs 2828 2299 0.81 351160 uncultured methanogenic archaeon RC-I 3071 2100 0.68 351348 Marinobacter aquaeolei VT8 4170 3254 0.78 351605 Geobacter uraniireducens Rf4 4255 3300 0.78 351607 Acidothermus cellulolyticus 11B 2158 1784 0.83 351627 Caldicellulosiruptor saccharolyticus DSM 8903 2629 2112 0.80 351669 Measles virus strain Biken 1 1 1.00 351745 Shewanella sp. W3-18-1 4007 3254 0.81 351746 Pseudomonas putida F1 5245 4327 0.82 352520 Influenza A virus (A/mallard/Alberta/35/1976(H1N1)) 6 6 1.00 352551 Influenza A virus (A/duck/Hong Kong/7/1975(H3N2)) 13 13 1.00 353152 Cryptosporidium parvum Iowa II 3800 2148 0.57 353153 Trypanosoma cruzi strain CL Brener 19238 9444 0.49 354242 Campylobacter jejuni subsp. jejuni 81-176 1805 1376 0.76 355276 Leptospira borgpetersenii serovar Hardjo-bovis L550 2872 1977 0.69 355277 Leptospira borgpetersenii serovar Hardjo-bovis JB197 2829 1950 0.69 355278 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' 3595 2444 0.68 355315 Streptococcus agalactiae serogroup Ia 1983 1686 0.85 356386 Hepatitis C virus (isolate India) 1 1 1.00 356390 Hepatitis C virus SA13 1 1 1.00 356391 Hepatitis C virus (isolate 6a33) 1 1 1.00 356410 Hepatitis C virus (isolate HC-G9) 1 1 1.00 356411 Hepatitis C virus JFH-1 1 1 1.00 356412 Hepatitis C virus (isolate JPUT971017) 1 1 1.00 356413 Hepatitis C virus (isolate BEBE1) 1 1 1.00 356414 Hepatitis C virus (isolate VAT96) 1 1 1.00 356415 Hepatitis C virus (isolate NZL1) 1 1 1.00 356416 Hepatitis C virus (isolate HCV-K3a/650) 1 1 1.00 356417 Hepatitis C virus (isolate JK049) 1 1 1.00 356418 Hepatitis C virus ED43 2 2 1.00 356419 Hepatitis C virus (isolate EUH1480) 1 1 1.00 356420 Hepatitis C virus (isolate EUHK2) 1 1 1.00 356421 Hepatitis C virus (isolate Th580) 1 1 1.00 356422 Hepatitis C virus (isolate VN235) 1 1 1.00 356423 Hepatitis C virus (isolate JK046) 1 1 1.00 356424 Hepatitis C virus (isolate VN004) 1 1 1.00 356425 Hepatitis C virus (isolate VN405) 1 1 1.00 356663 Xenotropic MuLV-related virus VP35 3 3 1.00 356664 Xenotropic MuLV-related virus VP42 3 3 1.00 357244 Orientia tsutsugamushi str. Boryong 967 708 0.73 357348 Burkholderia pseudomallei 1106a 7145 4585 0.64 357355 Hepatitis C virus (isolate Tr Kj) 1 1 1.00 357544 Helicobacter pylori HPAG1 1541 1179 0.77 357804 Psychromonas ingrahamii 37 3530 2929 0.83 357808 Roseiflexus sp. RS-1 4494 3355 0.75 357809 Clostridium phytofermentans ISDg 3891 3056 0.79 358681 Brevibacillus brevis NBRC 100599 5887 4374 0.74 359391 Brucella melitensis biovar Abortus 2308 3024 2388 0.79 359786 Staphylococcus aureus subsp. aureus JH9 2708 2232 0.82 359787 Staphylococcus aureus subsp. aureus JH1 2761 2228 0.81 360094 Xanthomonas oryzae pv. oryzae PXO99A 4587 3132 0.68 360095 Bartonella bacilliformis KC583 1255 997 0.79 360102 Yersinia pestis Antiqua 4135 3460 0.84 360104 Campylobacter concisus 13826 2063 1436 0.70 360105 Campylobacter curvus 525.92 1928 1433 0.74 360106 Campylobacter fetus subsp. fetus 82-40 1715 1359 0.79 360107 Campylobacter hominis ATCC BAA-381 1687 1139 0.68 360109 Campylobacter jejuni subsp. doylei 269.97 1712 1283 0.75 360115 Coxiella burnetii RSA 331 1891 1226 0.65 360393 Breda virus serotype 1 6 5 0.83 360910 Bordetella avium 197N 3372 2823 0.84 360911 Exiguobacterium sp. AT1b 3021 2343 0.78 361100 Bacillus cereus Q1 5459 4035 0.74 362242 Mycobacterium ulcerans Agy99 4208 3317 0.79 362651 Human immunodeficiency virus type 1 (isolate YU2) 9 9 1.00 362663 Escherichia coli 536 4605 3976 0.86 362948 Lactobacillus salivarius UCC118 1998 1538 0.77 362976 Haloquadratum walsbyi DSM 16790 2645 1745 0.66 363066 Influenza A virus (A/South Canterbury/35/2000(H1N1)) 11 11 1.00 363253 Lawsonia intracellularis PHE/MN1-00 1342 1096 0.82 364106 Escherichia coli UTI89 5198 4216 0.81 364370 Turkey astrovirus 1 36 35 0.97 365044 Polaromonas naphthalenivorans CJ2 4887 3703 0.76 365089 Influenza A virus (A/goose/Guangxi/345/2005(H5N1)) 11 11 1.00 365659 Streptococcus mitis B6 1978 1607 0.81 366394 Sinorhizobium medicae WSM419 6148 4928 0.80 366602 Caulobacter sp. K31 5373 4128 0.77 367110 Neurospora crassa OR74A 9841 5814 0.59 367737 Arcobacter butzleri RM4018 2254 1760 0.78 367775 Cryptococcus gattii WM276 6560 4659 0.71 367830 Staphylococcus aureus subsp. aureus USA300 2607 2196 0.84 367928 Bifidobacterium adolescentis ATCC 15703 1629 1305 0.80 368407 Methanoculleus marisnigri JR1 2476 1824 0.74 368408 Thermofilum pendens Hrk 5 1876 1302 0.69 369723 Salinispora tropica CNB-440 4524 3290 0.73 370354 Entamoeba dispar SAW760 8606 4491 0.52 370438 Pelotomaculum thermopropionicum SI 2884 2262 0.78 370551 Streptococcus pyogenes MGAS9429 1868 1463 0.78 370552 Streptococcus pyogenes MGAS10270 1964 1532 0.78 370553 Streptococcus pyogenes MGAS2096 1885 1494 0.79 370554 Streptococcus pyogenes MGAS10750 1964 1556 0.79 371094 Chikungunya virus strain S27-African prototype 2 2 1.00 371095 Chikungunya virus strain Senegal 37997 2 2 1.00 371096 Chikungunya virus strain Nagpur 1 1 1.00 372461 Buchnera aphidicola BCc 362 350 0.97 373153 Streptococcus pneumoniae D39 1923 1583 0.82 373193 Xenotropic MuLV-related virus VP62 3 3 1.00 373384 Shigella flexneri 5 str. 8401 3867 3443 0.89 373903 Halothermothrix orenii H 168 2324 1952 0.84 374463 Baumannia cicadellinicola str. Hc (Homalodisca coagulata) 595 578 0.97 374596 Eastern equine encephalitis virus (strain PE-0.0155) 2 2 1.00 374597 Eastern equine encephalitis virus (strain PE-3.0815) 2 2 1.00 374598 Eastern equine encephalitis virus (strain Florida 91-469) 2 2 1.00 374833 Neisseria meningitidis 053442 1998 1530 0.77 374847 Candidatus Korarchaeum cryptofilum OPF8 1602 1219 0.76 374930 Haemophilus influenzae PittEE 1615 1416 0.88 374931 Haemophilus influenzae PittGG 1662 1406 0.85 374989 O'nyong-nyong virus (strain SG650) 2 2 1.00 374990 Mayaro virus (strain Brazil) 2 2 1.00 375286 Janthinobacterium sp. Marseille 3695 3026 0.82 375451 Roseobacter denitrificans OCh 114 4119 3207 0.78 376262 Rubella virus strain BRD1 2 2 1.00 376263 Rubella virus strain BRDII 2 2 1.00 376264 Rubella virus strain TO-336 2 2 1.00 376265 Rubella virus strain TO-336 vaccine 2 2 1.00 376266 Rubella virus strain Cendehill 2 2 1.00 376267 Rubella virus strain RN-UK86 2 2 1.00 376610 Venezuelan equine encephalitis virus (strain CPA201) 1 1 1.00 376619 Francisella tularensis subsp. holarctica LVS 1678 1340 0.80 376686 Flavobacterium johnsoniae UW101 5020 3368 0.67 377628 Yersinia pestis Nepal516 4869 3766 0.77 377629 Teredinibacter turnerae T7901 4250 3049 0.72 378753 Kocuria rhizophila DC2201 2352 1882 0.80 378806 Stigmatella aurantiaca DW4/3-1 12954 7886 0.61 378809 Ravn virus - Ravn, Kenya, 1987 24 24 1.00 378830 Lake Victoria marburgvirus - Angola2005 11 11 1.00 379066 Gemmatimonas aurantiaca T-27 3932 2798 0.71 379508 Lodderomyces elongisporus NRRL YB-4239 5779 4317 0.75 379731 Pseudomonas stutzeri A1501 4092 3438 0.84 379756 Influenza A virus (A/New Jersey/8/1976(H1N1)) 14 14 1.00 380213 Influenza A virus (A/Taiwan/1/1986(H1N1)) 27 27 1.00 380216 Influenza A virus (A/swine/Hong Kong/3/1976(H3N2)) 2 2 1.00 380217 Influenza A virus (A/swine/Hong Kong/4/1976(H3N2)) 1 1 1.00 380282 Influenza A virus (A/Fort Monmouth/1/1947-mouse adapted(H1N1)) 11 11 1.00 380285 Influenza A virus (A/turkey/Ireland/1378/1983(H5N8)) 11 11 1.00 380337 Influenza A virus (A/equine/Prague/1/1956(H7N7)) 18 18 1.00 380340 Influenza A virus (A/equine/London/1416/1973(H7N7)) 7 7 1.00 380341 Influenza A virus (A/swine/Iowa/17672/1988(H1N1)) 16 16 1.00 380342 Influenza A virus (A/swine/Iowa/15/1930(H1N1)) 16 16 1.00 380346 Influenza A virus (A/Wisconsin/3523/1988(H1N1)) 6 6 1.00 380347 Influenza A virus (A/swine/Netherlands/12/1985(H1N1)) 7 7 1.00 380349 Influenza A virus (A/turkey/Minnesota/1661/1981(H1N1)) 3 3 1.00 380394 Acidithiobacillus ferrooxidans ATCC 53993 2747 2081 0.76 380703 Aeromonas hydrophila subsp. hydrophila ATCC 7966 4122 3539 0.86 380749 Hydrogenobaculum sp. Y04AAS1 1626 1277 0.79 380949 Influenza A virus (A/Beijing/353/1989(H3N2)) 16 16 1.00 380960 Influenza A virus (A/Tokyo/3/1967(H2N2)) 10 10 1.00 380983 Influenza A virus (A/Leningrad/134/47/1957(H2N2)) 9 9 1.00 380984 Influenza A virus (A/Leningrad/134/17/1957(H2N2)) 10 10 1.00 380985 Influenza A virus (A/Chile/1/1983(H1N1)) 11 11 1.00 381516 Influenza A virus (A/USSR/90/1977(H1N1)) 16 16 1.00 381517 Influenza A virus (A/Udorn/307/1972(H3N2)) 10 10 1.00 381518 Influenza A virus (A/Wilson-Smith/1933(H1N1)) 32 32 1.00 381666 Ralstonia eutropha H16 6614 5415 0.82 381754 Pseudomonas aeruginosa PA7 6246 4818 0.77 381764 Fervidobacterium nodosum Rt17-B1 1726 1434 0.83 382245 Aeromonas salmonicida subsp. salmonicida A449 4342 3521 0.81 382638 Helicobacter acinonychis str. Sheeba 1596 1139 0.71 382640 Bartonella tribocorum CIP 105476 1962 1408 0.72 382781 Influenza A virus (A/Singapore/1/1957(H2N2)) 24 24 1.00 382812 Influenza A virus (A/Guangdong/39/1989(H3N2)) 7 7 1.00 382825 Influenza A virus (A/Philippines/2/1982(H3N2)) 17 17 1.00 382828 Influenza A virus (A/RI/5-/1957(H2N2)) 7 7 1.00 382838 Influenza A virus (A/chicken/Germany/N/1949(H10N7)) 25 25 1.00 382842 Influenza A virus (A/swine/29/1937(H1N1)) 5 5 1.00 382844 Influenza A virus (A/swine/Cambridge/1/1935(H1N1)) 1 1 1.00 382846 Influenza A virus (A/swine/Dandong/9/1983(H3N2)) 1 1 1.00 382848 Influenza A virus (A/swine/Hong Kong/126/1982(H3N2)) 10 10 1.00 382851 Influenza A virus (A/swine/Italy/839/1989(H1N1)) 1 1 1.00 382855 Influenza A virus (A/swine/Wisconsin/1/1967(H1N1)) 11 10 0.91 383372 Roseiflexus castenholzii DSM 13941 4324 3255 0.75 383530 Influenza A virus (A/swine/Italy/141/1981(H1N1)) 1 1 1.00 383531 Influenza A virus (A/swine/Italy/2/1979(H1N1)) 1 1 1.00 383532 Influenza A virus (A/swine/Italy/437/1976(H1N1)) 1 1 1.00 383533 Influenza A virus (A/swine/Wisconsin/1/1961(H1N1)) 11 10 0.91 383534 Influenza A virus (A/swine/Wisconsin/1/1957(H1N1)) 12 12 1.00 383535 Influenza A virus (A/swine/May/1954(H1N1)) 3 3 1.00 383536 Influenza A virus (A/swine/41/1949(H1N1)) 1 1 1.00 383537 Influenza A virus (A/swine/Iowa/1946(H1N1)) 1 1 1.00 383538 Influenza A virus (A/swine/Jamesburg/1942(H1N1)) 12 12 1.00 383539 Influenza A virus (A/swine/Ohio/23/1935(H1N1)) 12 12 1.00 383541 Influenza A virus (A/England/19/1955(H1N1)) 1 1 1.00 383543 Influenza A virus (A/Hickox/1940(H1N1)) 11 11 1.00 383546 Influenza A virus (A/teal/Iceland/29/1980(H7N7)) 1 1 1.00 383547 Influenza A virus (A/duck/Australia/749/1980(H1N1)) 13 13 1.00 383550 Influenza A virus (A/duck/England/1/1956(H11N6)) 24 24 1.00 383551 Influenza A virus (A/fowl/Dobson/'Dutch'/1927(H7N7)) 1 1 1.00 383567 Influenza A virus (A/Shanghai/16/1989(H3N2)) 2 2 1.00 383568 Influenza A virus (A/Shanghai/11/1987(H3N2)) 3 3 1.00 383569 Influenza A virus (A/Shanghai/31/1980(H3N2)) 2 2 1.00 383570 Influenza A virus (A/Shanghai/6/1990(H3N2)) 2 2 1.00 383571 Influenza A virus (A/Memphis/6/1986(H3N2)) 2 2 1.00 383572 Influenza A virus (A/Memphis/14/1985(H3N2)) 1 1 1.00 383575 Influenza A virus (A/Memphis/5/1980(H3N2)) 1 1 1.00 383578 Influenza A virus (A/Memphis/4/1980(H3N2)) 11 11 1.00 383579 Influenza A virus (A/Memphis/18/1978(H3N2)) 11 11 1.00 383580 Influenza A virus (A/Memphis/2/1978(H3N2)) 11 11 1.00 383581 Influenza A virus (A/Memphis/110/1976(H3N2)) 11 11 1.00 383582 Influenza A virus (A/Memphis/1/1973(H3N2)) 1 1 1.00 383583 Influenza A virus (A/Memphis/101/1972(H3N2)) 11 11 1.00 383586 Influenza A virus (A/Memphis/1/1971(H3N2)) 13 13 1.00 383588 Influenza A virus (A/Memphis/8/1988(H3N2)) 16 16 1.00 383589 Influenza A virus (A/Memphis/3/1988(H3N2)) 12 12 1.00 383592 Influenza A virus (A/Guangdong/9/1987(H3N2)) 2 2 1.00 383593 Influenza A virus (A/Guangdong/38/1977(H3N2)) 1 1 1.00 383595 Influenza A virus (A/Beijing/337/1989(H3N2)) 1 1 1.00 383596 Influenza A virus (A/Beijing/39/1975(H3N2)) 11 11 1.00 383597 Influenza A virus (A/Beijing/352/1989(H3N2)) 4 4 1.00 383603 Influenza A virus (A/turkey/Minnesota/833/1980(H4N2)) 11 11 1.00 384479 Influenza A virus (A/swine/Tennessee/26/1977(H1N1)) 3 3 1.00 384482 Influenza A virus (A/swine/Iowa/1976/1931(H1N1)) 2 2 1.00 384483 Influenza A virus (A/swine/Hong Kong/127/1982(H3N2)) 5 5 1.00 384484 Influenza A virus (A/swine/Hong Kong/81/1978(H3N2)) 12 11 0.92 384485 Influenza A virus (A/swine/Hong Kong/6/1976(H3N2)) 2 2 1.00 384487 Influenza A virus (A/Swine/Indiana/1726/1988(H1N1)) 15 15 1.00 384493 Influenza A virus (A/seal/Mass/1/1980(H7N7)) 12 11 0.92 384495 Influenza A virus (A/Kiev/59/1979(H1N1)) 5 5 1.00 384498 Influenza A virus (A/Ann Arbor/6/1960(H2N2)) 14 13 0.93 384499 Influenza A virus (A/gull/Maryland/704/1977(H13N6)) 27 27 1.00 384500 Influenza A virus (A/Beijing/11/1956(H1N1)) 1 1 1.00 384501 Influenza A virus (A/swine/Ontario/2/1981(H1N1)) 15 15 1.00 384502 Influenza A virus (A/mallard/New York/6750/1978(H2N2)) 11 11 1.00 384505 Influenza A virus (A/nt/60/1968(H3N2)) 9 8 0.89 384518 Influenza A virus (A/mallard/New York/6874/1978(H3N2)) 11 11 1.00 384525 Influenza A virus (A/Fort Warren/1/1950(H1N1)) 8 8 1.00 384616 Pyrobaculum islandicum DSM 4184 1976 1323 0.67 384676 Pseudomonas entomophila L48 5126 4150 0.81 385576 Influenza A virus (A/Alaska/6/1977(H3N2)) 2 2 1.00 385586 Influenza A virus (A/chicken/Pennsylvania/1/1983(H5N2)) 12 12 1.00 385590 Influenza A virus (A/duck/Czechoslovakia/1956(H4N6)) 21 21 1.00 385596 Influenza A virus (A/Ohio/4/1983(H1N1)) 1 1 1.00 385597 Influenza A virus (A/gull/Minnesota/945/1980(H13N6)) 11 11 1.00 385606 Influenza A virus (A/swine/Tennessee/24/1977(H1N1)) 4 4 1.00 385620 Influenza A virus (A/turkey/Wisconsin/1/1966(H9N2)) 24 24 1.00 385624 Influenza A virus (A/Port Chalmers/1/1973(H3N2)) 14 14 1.00 385630 Influenza A virus (A/Bangkok/1/1979(H3N2)) 15 15 1.00 385640 Influenza A virus (A/Memphis/102/1972(H3N2)) 13 13 1.00 385644 Influenza A virus (A/swine/Ukkel/1/1984(H3N2)) 1 1 1.00 385645 Influenza A virus (A/swine/Colorado/1/1977(H3N2)) 12 12 1.00 386032 Reston ebolavirus - Reston (1989) 9 9 1.00 386033 Sudan ebolavirus - Uganda (2000) 9 9 1.00 386043 Listeria welshimeri serovar 6b str. SLCC5334 2769 2247 0.81 386415 Clostridium novyi NT 2305 1870 0.81 386656 Yersinia pestis Pestoides F 3942 3348 0.85 387092 Nitratiruptor sp. SB155-2 1843 1500 0.81 387093 Sulfurovum sp. NBC37-1 2433 1847 0.76 387139 Influenza A virus (A/Aichi/2/1968(H3N2)) 11 11 1.00 387147 Influenza A virus (A/England/878/1969(H3N2)) 10 10 1.00 387159 Influenza A virus (A/Hong Kong/5/1983(H3N2)) 11 11 1.00 387161 Influenza A virus (A/Japan/305/1957(H2N2)) 34 34 1.00 387163 Influenza A virus (A/Leningrad/134/1957(H2N2)) 10 10 1.00 387191 Influenza A virus (A/camel/Mongolia/1982(H1N1)) 7 7 1.00 387203 Influenza A virus (A/duck/Bavaria/2/1977(H1N1)) 4 4 1.00 387207 Influenza A virus (A/duck/Hokkaido/8/1980(H3N8)) 11 11 1.00 387344 Lactobacillus brevis ATCC 367 2201 1719 0.78 387662 Candidatus Carsonella ruddii PV 182 141 0.77 388396 Vibrio fischeri MJ11 4034 3173 0.79 388796 HIV-1 M:C_ETH2220 9 9 1.00 388812 HIV-1 M:C_92BR025 9 9 1.00 388813 HIV-1 M:F1_VI850 9 9 1.00 388814 HIV-1 M:F1_93BR020 9 9 1.00 388815 HIV-1 M:F2_MP255C 8 8 1.00 388816 HIV-1 O_MVP5180 9 9 1.00 388818 HIV-1 N_YBF30 9 9 1.00 388819 HIV-1 N_YBF106 9 9 1.00 388821 HIV-2 B_EHO 10 10 1.00 388822 HIV-2 B_UC1 9 9 1.00 388823 HIV-1 M:F2_MP257C 8 8 1.00 388824 HIV-1 M:G_SE6165 7 7 1.00 388825 HIV-1 M:G_92NG083 8 8 1.00 388826 HIV-1 M:H_90CF056 9 9 1.00 388888 HIV-1 M:H_VI991 8 8 1.00 388904 HIV-1 M:J_SE9173 8 8 1.00 388905 HIV-1 M:J_SE9280 8 8 1.00 388906 HIV-1 M:K_96CM-MP535 8 8 1.00 388907 HIV-1 M:K_97ZR-EQTB11 8 8 1.00 388910 SIVcpz TAN1 9 8 0.89 388911 SIVcpz MB66 9 9 1.00 388912 SIVcpz EK505 9 9 1.00 388919 Streptococcus sanguinis SK36 2269 1812 0.80 389167 Bat CoV 279/2005 12 12 1.00 389230 Bat coronavirus (BtCoV/133/2005) 10 7 0.70 390235 Pseudomonas putida W619 5179 4281 0.83 390236 Borrelia afzelii PKo 1886 1344 0.71 390333 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 1522 1185 0.78 390874 Thermotoga petrophila RKU-1 1784 1533 0.86 391008 Stenotrophomonas maltophilia R551-3 4026 3154 0.78 391009 Thermosipho melanesiensis BI429 1877 1486 0.79 391037 Salinispora arenicola CNS-205 4848 3484 0.72 391038 Burkholderia phymatum STM815 7465 5863 0.79 391165 Granulibacter bethesdensis CGDNIH1 2430 1938 0.80 391295 Streptococcus suis 05ZYH33 2178 1702 0.78 391296 Streptococcus suis 98HAH33 2179 1696 0.78 391595 Roseobacter litoralis Och 149 4500 3499 0.78 391735 Verminephrobacter eiseniae EF01-2 4911 3946 0.80 391774 Desulfovibrio vulgaris DP4 3085 2442 0.79 391896 Rickettsia bellii OSU 85-389 1443 975 0.68 391904 Bifidobacterium longum subsp. infantis ATCC 15697 3196 2090 0.65 392021 Rickettsia rickettsii str. 'Sheila Smith' 1345 828 0.62 392499 Sphingomonas wittichii RW1 5317 4189 0.79 392500 Shewanella woodyi ATCC 51908 4865 3759 0.77 392809 Influenza A virus (A/Victoria/3/1975(H3N2)) 7 7 1.00 393011 Francisella tularensis subsp. holarctica OSU18 1510 1190 0.79 393115 Francisella tularensis subsp. tularensis FSC198 1528 1212 0.79 393305 Yersinia enterocolitica subsp. enterocolitica 8081 4021 3551 0.88 393557 Influenza A virus (A/Leningrad/1954/1(H1N1)) 5 5 1.00 393560 Influenza A virus (A/Brazil/11/1978(H1N1)) 13 13 1.00 393562 Influenza A virus (A/India/6263/1980(H1N1)) 11 11 1.00 393563 Influenza A virus (A/England/321/1977(H3N2)) 1 1 1.00 393595 Alcanivorax borkumensis SK2 2756 2284 0.83 394221 Maricaulis maris MCS10 3060 2353 0.77 394239 Koala retrovirus 3 3 1.00 394503 Clostridium cellulolyticum H10 3289 2500 0.76 394786 Influenza A virus (A/Nanchang/11/1996(H1N1)) 11 11 1.00 395019 Burkholderia multivorans ATCC 17616 7214 5710 0.79 395491 Rhizobium leguminosarum bv. trifolii WSM1325 6988 5433 0.78 395492 Rhizobium leguminosarum bv. trifolii WSM2304 6403 5088 0.79 395494 Gallionella capsiferriformans ES-2 2853 2207 0.77 395495 Leptothrix cholodnii SP-6 4343 3566 0.82 395960 Rhodopseudomonas palustris TIE-1 5245 3996 0.76 395961 Cyanothece sp. PCC 7425 5232 3591 0.69 395963 Beijerinckia indica subsp. indica ATCC 9039 3774 2883 0.76 395965 Methylocella silvestris BL2 3816 2850 0.75 396513 Staphylococcus carnosus subsp. carnosus TM300 2460 2033 0.83 396588 Thioalkalivibrio sulfidophilus HL-EbGr7 3272 2578 0.79 396595 Thioalkalivibrio sp. K90mix 2823 2213 0.78 397342 Horsepox virus 228 199 0.87 397945 Acidovorax citrulli AAC00-1 4602 3513 0.76 397948 Caldivirga maquilingensis IC-167 1962 1449 0.74 398511 Bacillus pseudofirmus OF4 4312 3117 0.72 398527 Burkholderia phytofirmans PsJN 7197 5753 0.80 398577 Burkholderia ambifaria MC40-6 6690 5357 0.80 398578 Delftia acidovorans SPH-1 5968 4720 0.79 398579 Shewanella pealeana ATCC 700345 4181 3362 0.80 398580 Dinoroseobacter shibae DFL 12 4086 3258 0.80 398767 Geobacter lovleyi SZ 3644 2798 0.77 399549 Metallosphaera sedula DSM 5348 2256 1605 0.71 399550 Staphylothermus marinus F1 1570 1106 0.70 399599 Shewanella baltica OS195 4619 3590 0.78 399726 Thermoanaerobacter sp. X514 2323 1985 0.85 399739 Pseudomonas mendocina ymp 4563 3823 0.84 399741 Serratia proteamaculans 568 4930 4337 0.88 399742 Enterobacter sp. 638 4238 3762 0.89 400667 Acinetobacter baumannii ATCC 17978 3798 2858 0.75 400668 Marinomonas sp. MWYL1 4416 3780 0.86 400673 Legionella pneumophila str. Corby 3202 2188 0.68 401473 Bifidobacterium dentium Bd1 2121 1637 0.77 401614 Francisella novicida U112 1721 1415 0.82 401671 HIV-1 M:B_89.6 9 9 1.00 402036 HTLV-3 strain 2026ND 6 5 0.83 402046 HTLV-1 isolate Mel 15 7 6 0.86 402464 Influenza A virus (A/gray teal/Australia/2/1979(H4N4)) 12 12 1.00 402520 Influenza A virus (A/chicken/Victoria/1985(H7N7)) 11 11 1.00 402525 Influenza A virus (A/starling/Victoria/5156/1985(H7N7)) 10 10 1.00 402527 Influenza A virus (A/chicken/Scotland/1959(H5N1)) 21 21 1.00 402612 Flavobacterium psychrophilum JIP02/86 2408 1676 0.70 402626 Ralstonia pickettii 12J 4890 3849 0.79 402676 Schizosaccharomyces japonicus yFS275 4789 4019 0.84 402880 Methanococcus maripaludis C5 1821 1464 0.80 402881 Parvibaculum lavamentivorans DS-1 3580 2905 0.81 402882 Shewanella baltica OS185 4367 3462 0.79 403677 Phytophthora infestans T30-4 17605 9100 0.52 403833 Petrotoga mobilis SJ95 1890 1572 0.83 404380 Geobacter bemidjiensis Bem 4048 3104 0.77 404589 Anaeromyxobacter sp. Fw109-5 4461 3260 0.73 405416 Acinetobacter baumannii ACICU 3745 2821 0.75 405440 Xylella fastidiosa M12 2056 1517 0.74 405441 Xylella fastidiosa M23 2163 1600 0.74 405531 Bacillus cereus G9842 5844 4065 0.70 405532 Bacillus cereus B4264 5384 3944 0.73 405534 Bacillus cereus AH187 5747 4047 0.70 405535 Bacillus cereus AH820 5798 4119 0.71 405566 Lactobacillus helveticus DPC 4571 1580 1351 0.86 405948 Saccharopolyspora erythraea NRRL 2338 7173 5336 0.74 405955 Escherichia coli APEC O1 4870 4100 0.84 406327 Methanococcus vannielii SB 1661 1389 0.84 406425 Burkholderia cenocepacia MC0-3 6986 5749 0.82 406769 Human T-cell leukemia virus 3 (strain Pyl43) 6 5 0.83 406817 Xenorhabdus nematophila ATCC 19061 4439 3022 0.68 406818 Xenorhabdus bovienii SS-2004 4102 2879 0.70 407134 Yellow fever virus strain Ghana/Asibi/1927 1 1 1.00 407135 Yellow fever virus strain French neurotropic vaccine 1 1 1.00 407136 Yellow fever virus isolate Ivory Coast/1999 1 1 1.00 407137 Yellow fever virus Trinidad/79A/1979 1 1 1.00 407138 Yellow fever virus isolate Ivory Coast/85-82H/1982 1 1 1.00 407139 Yellow fever virus isolate Uganda/A7094A4/1948 1 1 1.00 407140 Yellow fever virus isolate Angola/14FA/1971 1 1 1.00 407141 Yellow fever virus isolate Ethiopia/Couma/1961 1 1 1.00 407148 Campylobacter jejuni subsp. jejuni 81116 1622 1316 0.81 407976 Shewanella baltica OS223 4384 3434 0.78 408685 Dengue virus 1 Brazil/97-11/1997 1 1 1.00 408686 Dengue virus 4 Philippines/H241/1956 1 1 1.00 408687 Dengue virus 4 Singapore/8976/1995 1 1 1.00 408688 Dengue virus 4 Thailand/0348/1991 1 1 1.00 408689 Dengue virus 4 Thailand/0476/1997 1 1 1.00 408690 Dengue virus 3 China/80-2/1980 1 1 1.00 408691 Dengue virus 3 Martinique/1243/1999 1 1 1.00 408692 Dengue virus 3 Sri Lanka/1266/2000 1 1 1.00 408693 Dengue virus 3 Singapore/8120/1995 1 1 1.00 408694 Dengue virus 2 Peru/IQT2913/1996 1 1 1.00 408870 Dengue virus 3 Philippines/H87/1956 1 1 1.00 408871 Dengue virus 4 Dominica/814669/1981 1 1 1.00 409438 Escherichia coli SE11 4979 4177 0.84 410289 Mycobacterium bovis BCG str. Pasteur 1173P2 3894 3049 0.78 410358 Methanocorpusculum labreanum Z 1739 1362 0.78 410359 Pyrobaculum calidifontis JCM 11548 2148 1421 0.66 411154 Gramella forsetii KT0803 3554 2459 0.69 412022 Burkholderia mallei NCTC 10229 4943 3609 0.73 412418 Borrelia recurrentis A1 977 704 0.72 412419 Borrelia duttonii Ly 1287 934 0.73 412694 Bacillus thuringiensis str. Al Hakam 4792 3804 0.79 412965 Candidatus Vesicomyosocius okutanii HA 936 850 0.91 413041 Dengue virus 2 Thailand/0168/1979 1 1 1.00 413404 Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 976 884 0.91 413997 Escherichia coli B str. REL606 4142 3730 0.90 414004 Cenarchaeum symbiosum A 2022 1018 0.50 414684 Rhodospirillum centenum SW 3984 2948 0.74 415426 Hyperthermus butylicus DSM 5456 1602 1109 0.69 416269 Actinobacillus pleuropneumoniae serovar 5b str. L20 2004 1832 0.91 416276 Rickettsia massiliae MTU5 974 809 0.83 416348 Halorubrum lacusprofundi ATCC 49239 3497 2188 0.63 416591 Thermotoga lettingae TMO 2040 1759 0.86 416674 Influenza B virus (B/Yamagata/16/1988) 17 17 1.00 416730 Influenza A virus (A/Memphis/10/1996(H1N1)) 11 11 1.00 416870 Lactococcus lactis subsp. cremoris MG1363 2390 1863 0.78 418127 Staphylococcus aureus subsp. aureus Mu3 2684 2198 0.82 418136 Francisella tularensis subsp. tularensis WY96-3418 1573 1258 0.80 418459 Puccinia graminis f. sp. tritici CRL 75-36-700-3 20437 5913 0.29 419610 Methylobacterium extorquens PA1 4822 3561 0.74 419665 Methanococcus aeolicus Nankai-3 1490 1266 0.85 419942 Sulfolobus islandicus Y.N.15.51 2853 1923 0.67 419947 Mycobacterium tuberculosis H37Ra 3991 3120 0.78 420174 Hepatitis C virus isolate HC-J4 1 1 1.00 420246 Geobacillus thermodenitrificans NG80-2 3424 2758 0.81 420247 Methanobrevibacter smithii ATCC 35061 1783 1283 0.72 420662 Methylibium petroleiphilum PM1 4359 3295 0.76 421877 Hepatitis C virus isolate HC-J1 1 1 1.00 421879 Hepatitis C virus isolate HCR6 1 1 1.00 423211 Streptococcus suis GZ1 1968 1619 0.82 423212 Legionella pneumophila 2300/99 Alcoy 3184 2187 0.69 423368 Salmonella enterica subsp. enterica serovar Newport str. SL254 4784 3897 0.81 423447 KI polyomavirus Stockholm 350 4 3 0.75 425011 Aspergillus niger CBS 513.88 14089 8232 0.58 425104 Shewanella sediminis HAW-EB3 4493 3644 0.81 425265 Malassezia globosa CBS 7966 4275 3347 0.78 425551 Influenza A virus (A/AA/Huston/1945(H1N1)) 11 11 1.00 425557 Influenza A virus (A/California/10/1978(H1N1)) 12 12 1.00 425562 Influenza A virus (A/Henry/1936(H1N1)) 11 11 1.00 425563 Influenza A virus (A/Iowa/1943(H1N1)) 11 11 1.00 425566 Influenza A virus (A/Malaya/302/1954(H1N1)) 11 11 1.00 425570 Influenza A virus (A/Phila/1935(H1N1)) 11 11 1.00 425580 Influenza A virus (A/Albany/12/1951(H1N1)) 11 11 1.00 425944 Sulfolobus islandicus L.D.8.5 2940 1918 0.65 426114 Thiomonas sp. 3As 3527 2774 0.79 426117 Methylobacterium sp. 4-46 6647 4755 0.72 426118 Sulfolobus islandicus M.16.4 2729 1867 0.68 426355 Methylobacterium radiotolerans JCM 2831 6388 4504 0.71 426368 Methanococcus maripaludis C7 1786 1436 0.80 426418 Pyrenophora tritici-repentis Pt-1C-BFP 12063 6996 0.58 426430 Staphylococcus aureus subsp. aureus str. Newman 2583 2153 0.83 427317 Sulfolobus islandicus M.14.25 2597 1844 0.71 427318 Sulfolobus islandicus M.16.27 2650 1877 0.71 428406 Ralstonia pickettii 12D 5315 3936 0.74 429314 Infectious hematopoietic necrosis virus - WRAC 6 6 1.00 429315 Infectious hematopoietic necrosis virus - Oregon69 6 6 1.00 429572 Sulfolobus islandicus L.S.2.15 2725 1891 0.69 430066 Brucella abortus S19 2996 2487 0.83 431241 Trichoderma reesei QM6a 9114 6464 0.71 431317 Triticum mosaic virus 2 2 1.00 431943 Clostridium kluyveri DSM 555 3828 2848 0.74 431946 Escherichia coli SE15 4461 3980 0.89 431947 Porphyromonas gingivalis ATCC 33277 2022 1392 0.69 434131 Neorickettsia risticii str. Illinois 898 605 0.67 434271 Actinobacillus pleuropneumoniae serovar 3 str. JL03 2026 1797 0.89 434488 Vesicular stomatitis Indiana virus (strain 98COE North America) 6 5 0.83 434489 Vesicular stomatitis Indiana virus (strain 94GUB Central America) 6 5 0.83 434490 Vesicular stomatitis Indiana virus (strain 85CLB South America) 6 5 0.83 434922 Coxiella burnetii Dugway 5J108-111 2029 1368 0.67 434923 Coxiella burnetii CbuG_Q212 1831 1250 0.68 434924 Coxiella burnetii CbuK_Q154 1915 1288 0.67 435590 Bacteroides vulgatus ATCC 8482 3982 2814 0.71 435591 Parabacteroides distasonis ATCC 8503 3830 2800 0.73 436017 Ostreococcus lucimarinus CCE9901 7404 5166 0.70 436114 Sulfurihydrogenibium sp. YO3AOP1 1712 1399 0.82 436308 Nitrosopumilus maritimus SCM1 1797 1173 0.65 436717 Acinetobacter sp. DR1 3879 2971 0.77 436907 Vanderwaltozyma polyspora DSM 70294 5353 4196 0.78 438753 Azorhizobium caulinodans ORS 571 4710 3926 0.83 439235 Desulfatibacillum alkenivorans AK-01 5198 3828 0.74 439292 Bacillus selenitireducens MLS10 3231 2623 0.81 439375 Ochrobactrum anthropi ATCC 49188 4765 3935 0.83 439386 Sulfolobus islandicus Y.G.57.14 2878 1906 0.66 439481 Aciduliprofundum boonei T469 3205 2355 0.73 439843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 4602 3774 0.82 439851 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4606 3772 0.82 439855 Escherichia coli SMS-3-5 4876 4107 0.84 440085 Methylobacterium chloromethanicum CM4 5491 3854 0.70 440266 WU Polyomavirus 262 77 0.29 441375 Cryptosporidium muris RN66 3930 2301 0.59 441620 Methylobacterium populi BJ001 5325 3820 0.72 441768 Acholeplasma laidlawii PG-8A 1380 1046 0.76 441770 Clostridium botulinum A str. ATCC 19397 3546 2749 0.78 441771 Clostridium botulinum A str. Hall 4237 3186 0.75 441772 Clostridium botulinum F str. Langeland 3655 2824 0.77 441952 Francisella tularensis subsp. mediasiatica FSC147 1388 1154 0.83 441959 Talaromyces stipitatus ATCC 10500 12996 8907 0.69 441960 Penicillium marneffei ATCC 18224 10444 7707 0.74 442493 Enterococcus phage phiEF24C 221 37 0.17 442563 Bifidobacterium animalis subsp. lactis AD011 1525 1211 0.79 442736 Bat coronavirus HKU3 12 12 1.00 443143 Geobacter sp. M18 4407 3301 0.75 443144 Geobacter sp. M21 4069 3109 0.76 443226 Coccidioides posadasii str. Silveira 10212 5530 0.54 443239 Human coronavirus HKU1 (isolate N1) 9 9 1.00 443240 Human coronavirus HKU1 (isolate N2) 9 9 1.00 443241 Human coronavirus HKU1 (isolate N5) 9 9 1.00 443906 Clavibacter michiganensis subsp. michiganensis NCPPB 382 3078 2305 0.75 444157 Thermoproteus neutrophilus V24Sta 1965 1293 0.66 444158 Methanococcus maripaludis C6 1825 1431 0.78 444177 Lysinibacillus sphaericus C3-41 4751 3401 0.72 444178 Brucella ovis ATCC 25840 2820 2316 0.82 444179 Candidatus Sulcia muelleri GWSS 227 214 0.94 444318 Influenza A virus (A/Texas/1/1977(H3N2)) 4 4 1.00 444450 Escherichia coli O157:H7 str. EC4115 5279 4262 0.81 445790 Rabies virus India 5 5 1.00 445791 Rabies virus China/MRV 5 5 1.00 445792 Rabies virus China/DRV 5 5 1.00 445793 Rabies virus silver-haired bat-associated SHBRV 5 5 1.00 445932 Elusimicrobium minutum Pei191 1528 1115 0.73 445985 Borrelia burgdorferi ZS7 1232 899 0.73 446462 Actinosynnema mirum DSM 43827 6912 4838 0.70 446465 Brachybacterium faecium DSM 4810 3063 2481 0.81 446466 Cellulomonas flavigena DSM 20109 3673 2668 0.73 446468 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 5497 4050 0.74 446469 Sanguibacter keddieii DSM 10542 3710 2835 0.76 446470 Stackebrandtia nassauensis DSM 44728 6379 4434 0.70 446471 Xylanimonas cellulosilytica DSM 15894 3441 2524 0.73 446561 Australian bat lyssavirus bat/AUS/1996 5 5 1.00 446562 Australian bat lyssavirus human/AUS/1998 5 5 1.00 447093 Ajellomyces capsulatus G186AR 9214 5308 0.58 447217 Anaeromyxobacter sp. K 4444 3210 0.72 448385 Sorangium cellulosum 'So ce 56' 9320 5696 0.61 449447 Microcystis aeruginosa NIES-843 5988 3381 0.56 450149 Simian rotavirus A/SA11-H96 12 12 1.00 450851 Phenylobacterium zucineum HLK1 3838 3205 0.84 451516 Staphylococcus aureus subsp. aureus USA300_TCH1516 2694 2099 0.78 451804 Aspergillus fumigatus A1163 9923 6968 0.70 452471 Candidatus Amoebophilus asiaticus 5a2 1253 837 0.67 452637 Opitutus terrae PB90-1 4588 3269 0.71 452638 Polynucleobacter necessarius subsp. necessarius STIR1 1507 1186 0.79 452659 Rickettsia rickettsii str. Iowa 1384 832 0.60 452662 Sphingobium japonicum UT26S 4347 3131 0.72 452863 Arthrobacter chlorophenolicus A6 4587 3282 0.72 453115 European bat lyssavirus 1 strain RV9 5 5 1.00 453116 European bat lyssavirus 2 strain RV1333 5 5 1.00 453457 Hirame rhabdovirus Korea/CA 9703/1997 6 6 1.00 453591 Ignicoccus hospitalis KIN4/I 1434 964 0.67 454166 Salmonella enterica subsp. enterica serovar Agona str. SL483 4592 3746 0.82 454169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 4757 3862 0.81 455434 Treponema pallidum subsp. pallidum SS14 1028 748 0.73 455488 Anaeromyxobacter dehalogenans 2CP-1 4460 3177 0.71 455632 Streptomyces griseus subsp. griseus NBRC 13350 7008 5097 0.73 455880 Influenza A virus (A/Texas/UR06-0195/2007(H1N1)) 11 11 1.00 456320 Methanococcus voltae A3 1658 1304 0.79 456442 Methanoregula boonei 6A8 2450 1820 0.74 456481 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 3730 2461 0.66 457570 Natranaerobius thermophilus JW/NM-WN-LF 2847 2260 0.79 458233 Macrococcus caseolyticus JCSC5402 2059 1740 0.85 458234 Francisella tularensis subsp. holarctica FTNF002-00 1515 1226 0.81 458817 Shewanella halifaxensis HAW-EB4 4276 3451 0.81 460265 Methylobacterium nodulans ORS 2060 8130 5221 0.64 465515 Micrococcus luteus NCTC 2665 2207 1734 0.79 469008 Escherichia coli BL21(DE3) 4848 4211 0.87 469371 Thermobispora bispora DSM 43833 3545 2748 0.78 469382 Halogeometricum borinquense DSM 11551 3894 2472 0.63 469383 Conexibacter woesei DSM 14684 5912 4469 0.76 470137 Brucella suis ATCC 23445 3226 2468 0.77 470422 Human hepatitis A virus Hu/Germany/GBM/1976 1 1 1.00 470423 Human hepatitis A virus Hu/China/H2/1982 1 1 1.00 470424 Human hepatitis A virus Hu/Arizona/HAS-15/1979 1 1 1.00 470591 Human hepatitis A virus Hu/France/CF-53/1979 1 1 1.00 470592 Human hepatitis A virus Hu/Sierra Leone/SLF88/1988 1 1 1.00 470593 Human hepatitis A virus Hu/Norway/NOR-21/1998 1 1 1.00 471223 Geobacillus sp. WCH70 3048 2452 0.80 471472 Chlamydia trachomatis 434/Bu 887 679 0.77 471473 Chlamydia trachomatis L2b/UCH-1/proctitis 883 678 0.77 471821 uncultured Termite group 1 bacterium phylotype Rs-D17 767 666 0.87 471852 Thermomonospora curvata DSM 43183 4888 3513 0.72 471853 Beutenbergia cavernae DSM 12333 4195 3233 0.77 471854 Dyadobacter fermentans DSM 18053 5703 3911 0.69 471855 Slackia heliotrinireducens DSM 20476 2750 2049 0.75 471856 Jonesia denitrificans DSM 20603 2495 1886 0.76 471857 Saccharomonospora viridis DSM 43017 3828 2923 0.76 471876 Streptococcus pyogenes NZ131 1700 1432 0.84 472759 Nitrosococcus halophilus Nc4 3770 2773 0.74 474186 Enterococcus faecalis OG1RF 2583 2083 0.81 474341 Human hepatitis A virus Hu/Japan/HAJ85-1/1985 1 1 1.00 475494 Influenza A virus (A/equine/Lexington/1/1966(H7N7)) 11 11 1.00 475778 Avian encephalomyelitis virus strain Calnek 1 1 1.00 475779 Avian encephalomyelitis virus strain Van Reokel 1 1 1.00 475780 Avian encephalomyelitis virus strain L2Z 1 1 1.00 476213 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 4601 3792 0.82 477974 Candidatus Desulforudis audaxviator MP104C 2136 1752 0.82 478009 Halobacterium salinarum R1 2615 1714 0.66 478434 Mycobacterium tuberculosis KZN 1435 4024 3113 0.77 478555 Beet yellows virus isolate Ukraine 8 7 0.88 478801 Kytococcus sedentarius DSM 20547 2531 1911 0.76 479431 Nakamurella multipartita DSM 44233 5123 3719 0.73 479432 Streptosporangium roseum DSM 43021 8955 6470 0.72 479433 Catenulispora acidiphila DSM 44928 8912 6215 0.70 479434 Sphaerobacter thermophilus DSM 20745 3471 2721 0.78 479435 Kribbella flavida DSM 17836 6940 5098 0.73 479436 Veillonella parvula DSM 2008 1843 1521 0.83 480116 Hepatitis B virus adw2/Rutter/1979 5 5 1.00 480119 Acinetobacter baumannii AB0057 3732 2800 0.75 480224 Chloroflexus sp. Y-400-fl 4153 2965 0.71 481448 Methylacidiphilum infernorum V4 2498 1517 0.61 481743 Paenibacillus sp. Y412MC10 6237 4866 0.78 481805 Escherichia coli ATCC 8739 4173 3811 0.91 481877 Enterocytozoon bieneusi H348 3311 1483 0.45 482133 Hepatitis B virus adr/Japan/Nishioka/1983 9 9 1.00 482134 Hepatitis B virus adw/Japan/Nishioka/1983 5 5 1.00 482235 Candidatus Phytoplasma mali AT 447 329 0.74 482561 Paracoccidioides brasiliensis Pb03 7872 4929 0.63 482820 Lake Victoria marburgvirus - Ozolin 7 7 1.00 483179 Brucella canis ATCC 23365 3238 2496 0.77 483219 Myxococcus fulvus HW-1 7262 4563 0.63 484019 Thermosipho africanus TCF52B 1918 1525 0.80 484022 Francisella philomiragia subsp. philomiragia ATCC 25017 1881 1547 0.82 485914 Halomicrobium mukohataei DSM 12286 3343 2134 0.64 485917 Pedobacter heparinus DSM 2366 4249 3074 0.72 485918 Chitinophaga pinensis DSM 2588 7179 4721 0.66 486041 Laccaria bicolor S238N-H82 17895 6417 0.36 486275 Torque teno virus Human/Japan/TRM1/1999 4 4 1.00 486276 Torque teno virus Human/Germany/KAV/2001 3 3 1.00 486277 Torque teno virus Human/Japan/SANBAN/1999 2 2 1.00 486278 Torque teno virus Human/China/CT23F/2001 4 4 1.00 486279 Torque teno virus Human/China/CT39F/2001 4 4 1.00 486280 Torque teno virus VT416 3 3 1.00 486281 Torque teno virus Chimpanzee/Japan/Pt-TTV6/2000 2 2 1.00 486282 Torque teno virus Japanese macaque/Japan/Mf-TTV9/2000 3 2 0.67 486410 Streptococcus dysgalactiae subsp. equisimilis GGS_124 2090 1719 0.82 486492 Chicken anemia virus Australia/CAU269-7/2000 3 3 1.00 487067 Torque teno virus Human/Ghana/GH1/1996 3 2 0.67 487099 Uukuniemi virus S23 4 3 0.75 487213 Streptococcus pneumoniae Taiwan19F-14 2034 1613 0.79 487214 Streptococcus pneumoniae Hungary19A-6 2152 1684 0.78 488221 Streptococcus pneumoniae 70585 2178 1675 0.77 488222 Streptococcus pneumoniae JJA 2120 1652 0.78 488223 Streptococcus pneumoniae P1031 2068 1613 0.78 488241 Influenza A virus (A/Korea/426/1968(H2N2)) 23 23 1.00 489449 Hepatitis B virus adw2/Southern-Africa/Cai 1 1 1.00 489454 Hepatitis B virus genotype A1 subtype adw2 (Isolate South Africa/84/2001) 5 5 1.00 489457 Hepatitis B virus genotype A2 (Isolate Japan/11D11HCCW/1998) 5 5 1.00 489458 Hepatitis B virus genotype A3 (Isolate Cameroon/CMR983/1994) 5 5 1.00 489459 Hepatitis B virus genotype A3 (Isolate Cameroon/CMR711/1994) 5 5 1.00 489461 Hepatitis B virus Vietnam/9873/1997 5 5 1.00 489462 Hepatitis B virus Vietnam/16091/1992 6 6 1.00 489463 Hepatitis B virus adw/China/patient4/1996 5 5 1.00 489464 Hepatitis B virus Japan/Yamagata-2/1998 5 5 1.00 489465 Hepatitis B virus Japan/Ry30/2002 5 5 1.00 489467 Hepatitis B virus ar/Japan/S-207/1988 5 5 1.00 489468 Hepatitis B virus ad/Japan/S-179/1988 4 4 1.00 489469 Hepatitis B virus ayw/China/Tibet127/2002 5 5 1.00 489470 Hepatitis B virus adr/Japan/A4/1994 4 4 1.00 489471 Hepatitis B virus ayw/Australia/AustRC/1992 5 5 1.00 489472 Hepatitis B virus Vietnam/3270/2000 5 5 1.00 489487 Hepatitis B virus ayw/Japan/JYW796/1988 5 5 1.00 489488 Hepatitis B virus ayw/Australia/AustKW/1991 5 5 1.00 489489 Hepatitis B virus ayw/Italy/CI/1992 5 5 1.00 489490 Hepatitis B virus Germany/1-91/1991 6 6 1.00 489495 Hepatitis B virus ayw4/Kou 4 4 1.00 489496 Hepatitis B virus Cote d'Ivoire/ABI-129/2003 4 4 1.00 489497 Hepatitis B virus Chimpanzee/Ch195/1999 4 4 1.00 489498 Hepatitis B virus Cote d'Ivoire/ABI-212/2003 4 4 1.00 489499 Hepatitis B virus adw4/El Salvador/1116Sal/1997 4 4 1.00 489500 Hepatitis B virus Argentina/sa11/2000 5 5 1.00 489501 Hepatitis B virus Argentina/sa16/2000 5 5 1.00 489503 Hepatitis B virus adw4q/Senegal/9203 5 5 1.00 489537 Hepatitis B virus United states/USG17/2002 4 4 1.00 489538 Hepatitis B virus IG29227/2000 4 4 1.00 489539 Hepatitis B virus United States/LAS2523/2002 4 4 1.00 489540 Hepatitis B virus adw4/Nicaragua/1853Nic/1997 4 4 1.00 489541 Hepatitis B virus adw4/Nicaragua/2928Nic/1997 5 5 1.00 489542 Hepatitis B virus duck/DHBV-3 4 4 1.00 489543 Hepatitis B virus duck/DHBV-16 5 5 1.00 489544 Hepatitis B virus ayw3q/gibbon/Hope 5 5 1.00 489545 Hepatitis B virus Orangutan/Somad 4 4 1.00 489546 Hepatitis B virus gorilla/Cameroon/gor97 5 5 1.00 489653 Neisseria lactamica 020-06 1961 1523 0.78 490133 Hepatitis B virus ayw/France/Tiollais/1979 7 5 0.71 490134 Hepatitis B virus Woolly monkey/Louisville 5 5 1.00 490899 Desulfurococcus kamchatkensis 1221n 1470 986 0.67 491077 Lactobacillus reuteri SD2112 2201 1738 0.79 491915 Anoxybacillus flavithermus WK1 2819 2297 0.81 491916 Rhizobium etli CIAT 652 6051 4631 0.77 491952 Marinomonas posidonica IVIA-Po-181 3489 2999 0.86 492094 Petunia vein clearing virus isolate Shepherd 1 1 1.00 492095 Petunia vein clearing virus isolate Hohn 1 1 1.00 498211 Cellvibrio japonicus Ueda107 3711 2828 0.76 498213 Clostridium botulinum B1 str. Okra 3844 2864 0.75 498214 Clostridium botulinum A3 str. Loch Maree 3981 2920 0.73 498217 Edwardsiella tarda EIB202 3568 2882 0.81 498761 Heliobacterium modesticaldum Ice1 2922 2075 0.71 499177 Clostridium sticklandii DSM 519 2572 2104 0.82 499556 Chapare virus 4 4 1.00 500485 Penicillium chrysogenum Wisconsin 54-1255 12773 7858 0.62 500578 Bean common mosaic necrosis virus NL-3 2 1 0.50 502025 Haliangium ochraceum DSM 14365 6684 4222 0.63 502779 Paracoccidioides brasiliensis Pb01 9116 4978 0.55 502780 Paracoccidioides brasiliensis Pb18 8750 4974 0.57 502800 Yersinia pseudotuberculosis YPIII 4171 3386 0.81 502801 Yersinia pseudotuberculosis PB1/+ 4213 3432 0.81 504474 Corynebacterium urealyticum DSM 7109 2011 1574 0.78 504832 Oligotropha carboxidovorans OM5 4643 3349 0.72 505682 Ureaplasma parvum serovar 3 str. ATCC 27815 609 421 0.69 506350 Influenza A virus (A/Hong Kong/1/1968(H3N2)) 29 29 1.00 507522 Klebsiella pneumoniae 342 5738 4707 0.82 508765 Clostridium botulinum B str. Eklund 17B 3473 2557 0.74 508767 Clostridium botulinum E3 str. Alaska E43 3254 2512 0.77 509169 Xanthomonas campestris pv. campestris str. B100 4410 3273 0.74 509170 Acinetobacter baumannii SDF 2767 2135 0.77 509173 Acinetobacter baumannii AYE 3652 2834 0.78 509190 Caulobacter segnis ATCC 21756 4136 3276 0.79 509615 Hepatitis E virus US2 3 3 1.00 509627 Hepatitis E virus Ct1 3 3 1.00 510516 Aspergillus oryzae RIB40 12059 8250 0.68 511437 Lactobacillus buchneri NRRL B-30929 2361 1843 0.78 511691 Streptococcus mutans NN2025 1892 1599 0.85 511995 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 847 698 0.82 512345 Hepatitis E virus swine/g3/United States/swUS1 3 3 1.00 512346 Hepatitis E virus human/g1/India/Hyderabad 3 3 1.00 512562 Helicobacter pylori Shi470 1564 1126 0.72 512566 Streptococcus pneumoniae G54 2106 1673 0.79 515618 Candidatus Riesia pediculicola USDA 540 446 0.83 515619 Eubacterium rectale ATCC 33656 3546 2256 0.64 515620 Eubacterium eligens ATCC 27750 2763 1956 0.71 515621 Clostridium botulinum Ba4 str. 657 3977 2888 0.73 515635 Dictyoglomus turgidum DSM 6724 1743 1476 0.85 515849 Podospora anserina S mat+ 10628 6778 0.64 516950 Streptococcus pneumoniae CGSP14 2193 1713 0.78 516993 Avian hepatitis E virus chicken/United States/Meng 3 2 0.67 517417 Chlorobaculum parvum NCIB 8327 2044 1655 0.81 517418 Chloroherpeton thalassium ATCC 35110 2708 2052 0.76 518766 Rhodothermus marinus DSM 4252 2861 2220 0.78 518998 Influenza A virus (A/Nymc X-163(Nymc X-157-St. Petersburg/8/2006)(H1N1)) 11 11 1.00 519441 Streptobacillus moniliformis DSM 12112 1431 1061 0.74 519442 Halorhabdus utahensis DSM 12940 3001 1983 0.66 521006 Neisseria gonorrhoeae NCCP11945 2595 1620 0.62 521007 Borrelia burgdorferi N40 1236 914 0.74 521008 Borrelia burgdorferi JD1 1360 1006 0.74 521010 Borrelia bissettii DN127 1403 1009 0.72 521011 Methanosphaerula palustris E1-9c 2655 1941 0.73 521045 Kosmotoga olearia TBF 19.5.1 2100 1696 0.81 521095 Atopobium parvulum DSM 20469 1353 1107 0.82 521096 Tsukamurella paurometabola DSM 20162 4170 3144 0.75 521097 Capnocytophaga ochracea DSM 7271 2172 1468 0.68 521098 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 3059 2297 0.75 521460 Caldicellulosiruptor bescii DSM 6725 2652 1999 0.75 522373 Stenotrophomonas maltophilia K279a 4369 3257 0.75 522772 Denitrovibrio acetiphilus DSM 12809 2901 2278 0.79 523791 Kangiella koreensis DSM 16069 2630 2072 0.79 523794 Leptotrichia buccalis C-1013-b 2218 1588 0.72 523796 Staphylococcus aureus subsp. aureus ST398 2673 2162 0.81 523846 Methanothermus fervidus DSM 2088 1283 1112 0.87 523850 Thermococcus onnurineus NA1 1978 1495 0.76 524364 Norovirus Hu/1968/US 3 3 1.00 525146 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 2345 1842 0.79 525897 Desulfomicrobium baculatum DSM 4028 3423 2768 0.81 525898 Sulfurospirillum deleyianum DSM 6946 2243 1765 0.79 525903 Thermanaerovibrio acidaminovorans DSM 6589 1737 1498 0.86 525904 Thermobaculum terrenum ATCC BAA-798 2827 2245 0.79 525909 Acidimicrobium ferrooxidans DSM 10331 1936 1556 0.80 526218 Sebaldella termitidis ATCC 33386 4124 2686 0.65 526221 Verticillium albo-atrum VaMs.102 10233 6517 0.64 526222 Desulfovibrio salexigens DSM 2638 3809 2964 0.78 526225 Geodermatophilus obscurus DSM 43160 4795 3454 0.72 526226 Gordonia bronchialis DSM 43247 4630 3402 0.73 529507 Proteus mirabilis HI4320 3661 3025 0.83 530564 Pirellula staleyi DSM 6068 4711 2953 0.63 531844 Flavobacteriaceae bacterium 3519-10 2533 1744 0.69 535289 Acidovorax ebreus TPSY 3461 2891 0.84 535722 Arthroderma gypseum CBS 118893 8907 5718 0.64 536056 Escherichia coli DH1 4593 4068 0.89 536232 Clostridium botulinum A2 str. Kyoto 3860 2910 0.75 537021 Candidatus Liberibacter asiaticus str. psy62 1102 821 0.75 537457 Actinobacillus pleuropneumoniae serovar 7 str. AP76 2114 1885 0.89 543526 Haloterrigena turkmenica DSM 5511 5116 3226 0.63 543728 Variovorax paradoxus S110 6272 5130 0.82 543734 Lactobacillus casei BL23 3000 2237 0.75 543939 Sputnik virophage 21 1 0.05 544404 Escherichia coli O157:H7 str. TW14359 5255 4388 0.84 544556 Geobacillus sp. Y412MC61 3414 2750 0.81 544711 Ajellomyces capsulatus H88 9446 5287 0.56 544712 Ajellomyces capsulatus H143 9545 5110 0.54 545124 Saccharomyces cerevisiae AWRI1631 5450 3880 0.71 545693 Bacillus megaterium QM B1551 5606 4204 0.75 546272 Brucella melitensis ATCC 23457 3125 2438 0.78 546342 Staphylococcus aureus subsp. aureus str. JKD6008 2652 2162 0.82 546414 Deinococcus deserti VCD115 3452 2624 0.76 547558 Methanohalophilus mahii DSM 5219 1986 1590 0.80 547559 Natrialba magadii ATCC 43099 4213 2587 0.61 548473 Staphylococcus aureus subsp. aureus TCH60 2693 2162 0.80 548476 Corynebacterium aurimucosum ATCC 700975 2509 1891 0.75 550537 Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 4198 3760 0.90 550538 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 3953 3551 0.90 550540 Ferrimonas balearica DSM 9799 3781 3033 0.80 552526 Streptococcus equi subsp. zooepidemicus MGCS10565 1861 1478 0.79 552531 Bifidobacterium animalis subsp. lactis BB-12 1641 1203 0.73 552536 Listeria monocytogenes HCC23 2972 2370 0.80 552811 Dehalogenimonas lykanthroporepellens BL-DC-9 1619 1225 0.76 553199 Propionibacterium acnes SK137 2347 1764 0.75 553480 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 4393 3258 0.74 553482 Streptococcus equi subsp. equi 4047 1916 1554 0.81 553483 Steptococcus equi subsp. zooepidemicus H70 1851 1534 0.83 554155 Arthroderma otae CBS 113480 8764 5760 0.66 554290 Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 4275 3669 0.86 554373 Moniliophthora perniciosa FA553 13649 5599 0.41 555079 Thermosediminibacter oceani DSM 16646 2151 1805 0.84 555217 Zymomonas mobilis subsp. mobilis ATCC 10988 1777 1475 0.83 555311 Sulfolobus solfataricus 98/2 2661 1812 0.68 555778 Halothiobacillus neapolitanus c2 2353 1956 0.83 555970 Bifidobacterium animalis subsp. lactis DSM 10140 1565 1229 0.79 556484 Phaeodactylum tricornutum CCAP 1055/1 10465 6415 0.61 557433 Lactobacillus reuteri JCM 1112 1792 1520 0.85 557436 Lactobacillus reuteri DSM 20016 1872 1542 0.82 557598 Laribacter hongkongensis HLHK9 3208 2393 0.75 557600 Acinetobacter baumannii AB307-0294 3452 2680 0.78 557722 Pseudomonas aeruginosa LESB58 5908 4780 0.81 557723 Haemophilus parasuis SH0165 2002 1694 0.85 557760 Rhodobacter sphaeroides KD131 4542 3503 0.77 559292 Saccharomyces cerevisiae S288c 6627 4757 0.72 559295 Lachancea thermotolerans CBS 6340 5093 4158 0.82 559297 Ajellomyces dermatitidis ER-3 9539 5465 0.57 559298 Ajellomyces dermatitidis SLH14081 9587 5502 0.57 559307 Zygosaccharomyces rouxii CBS 732 4987 4057 0.81 561007 Mycobacterium abscessus ATCC 19977 4945 3619 0.73 561229 Dickeya zeae Ech1591 4138 3566 0.86 561230 Pectobacterium carotovorum subsp. carotovorum PC1 4245 3677 0.87 561231 Pectobacterium wasabiae WPP163 4435 3669 0.83 561275 Mycobacterium bovis BCG str. Tokyo 172 3906 3059 0.78 561276 Streptococcus pneumoniae ATCC 700669 1985 1641 0.83 561304 Mycobacterium leprae Br4923 1599 1280 0.80 561443 African swine fever virus tick/South Africa/Pretoriuskop Pr4/1996 159 79 0.50 561444 African swine fever virus warthog/Namibia/Wart80/1980 160 79 0.49 561445 African swine fever virus pig/Kenya/KEN-50/1950 160 82 0.51 561501 Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) 553 539 0.97 561896 Postia placenta Mad-698-R 8983 3539 0.39 562019 Rickettsia peacockii str. Rustic 927 775 0.84 562970 Kyrpidia tusciae DSM 2912 3135 2529 0.81 563041 Helicobacter pylori G27 1501 1143 0.76 563178 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 555 541 0.97 565034 Brachyspira hyodysenteriae WA1 2652 1875 0.71 565042 Bifidobacterium longum subsp. longum JCM 1217 1908 1435 0.75 565050 Caulobacter crescentus NA1000 3853 2952 0.77 565575 Ureaplasma urealyticum serovar 10 str. ATCC 33699 646 421 0.65 566546 Escherichia coli W 4925 4234 0.86 568206 Bacillus anthracis str. CDC 684 5895 4113 0.70 568703 Lactobacillus rhamnosus GG 3239 2331 0.72 568704 Lactobacillus rhamnosus Lc 705 2952 2183 0.74 568708 Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 4546 3993 0.88 568813 Streptococcus suis SC84 1887 1582 0.84 568814 Streptococcus suis BM407 1922 1610 0.84 568819 Listeria monocytogenes serotype 4b str. CLIP 80459 2765 2323 0.84 570417 Wolbachia endosymbiont of Culex quinquefasciatus Pel 1161 816 0.70 570508 Helicobacter pylori P12 1572 1161 0.74 572263 Mycoplasma conjunctivae HRC/581 695 442 0.64 572264 Bacillus cereus 03BB102 5598 3994 0.71 572265 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2045 1375 0.67 572477 Allochromatium vinosum DSM 180 3223 2615 0.81 572478 Vulcanisaeta distributa DSM 14429 2493 1609 0.65 572480 Arcobacter nitrofigilis DSM 7299 3125 2442 0.78 572544 Ilyobacter polytropus DSM 2926 2859 2293 0.80 572546 Archaeoglobus profundus DSM 5631 1824 1264 0.69 572547 Aminobacterium colombiense DSM 12261 1872 1595 0.85 573061 Clostridium cellulovorans 743B 4211 3139 0.75 573063 Methanocaldococcus infernus ME 1440 1242 0.86 573064 Methanocaldococcus fervens AG86 1581 1279 0.81 573235 Escherichia coli O26:H11 str. 11368 5326 4541 0.85 573370 Desulfovibrio magneticus RS-1 4663 3243 0.70 573413 Spirochaeta smaragdinae DSM 11293 4212 3354 0.80 573569 Francisella sp. TX077308 1976 1545 0.78 573826 Candida dubliniensis CD36 5828 4537 0.78 574087 Acetohalobium arabaticum DSM 5501 2276 1966 0.86 574521 Escherichia coli O127:H6 str. E2348/69 4594 3998 0.87 574961 Saccharomyces cerevisiae JAY291 5193 4182 0.81 575788 Vibrio splendidus LGP32 4420 3504 0.79 578458 Schizophyllum commune H4-8 13128 6840 0.52 578460 Nosema ceranae BRL01 2060 1036 0.50 578827 Human rotavirus A64 G10P11 12 12 1.00 578828 Rotavirus A cow/USA/WC3/1981 G6P7[5] 12 12 1.00 578829 Rotavirus A human/JPN/KUN/1980 G2P1B[4] 3 3 1.00 578830 Rotavirus A Hu/WI61/1983/G9P1A[8] 12 12 1.00 578831 Rotavirus A human/USA/D/1974 G1P1A[8] 12 12 1.00 578832 Rotavirus A human/JPN/YO/1977 G3P1A[8] 7 7 1.00 578834 Rotavirus A human/USA/M/1976 G3 4 4 1.00 578843 Rotavirus A human/BEL/4106/2000 G3P11[14] 12 12 1.00 579112 Vibrio cholerae M66-2 3652 2988 0.82 579137 Methanocaldococcus vulcanius M7 1740 1348 0.77 579138 Zymomonas mobilis subsp. pomaceae ATCC 29192 1740 1463 0.84 579405 Dickeya dadantii Ech703 3967 3506 0.88 580049 Chlamydia trachomatis B/Jali20/OT 883 681 0.77 580050 Bifidobacterium animalis subsp. lactis Bl-04 1566 1231 0.79 580327 Thermoanaerobacterium thermosaccharolyticum DSM 571 2583 2115 0.82 582402 Hirschia baltica ATCC 49814 3187 2487 0.78 582744 Methylovorus glucosetrophus SIP3-4 2907 2288 0.79 583345 Methylotenera mobilis JLW8 2334 1976 0.85 583346 Clostridium kluyveri NBRC 12016 3496 2785 0.80 583356 Ignisphaera aggregans DSM 17230 1929 1232 0.64 585034 Escherichia coli IAI1 4330 3802 0.88 585035 Escherichia coli S88 4805 4177 0.87 585054 Escherichia fergusonii ATCC 35469 4311 3755 0.87 585055 Escherichia coli 55989 4797 4133 0.86 585056 Escherichia coli UMN026 4975 4255 0.86 585057 Escherichia coli IAI39 4554 3993 0.88 585395 Escherichia coli O103:H2 str. 12009 4964 4302 0.87 585396 Escherichia coli O111:H- str. 11128 5238 4361 0.83 585397 Escherichia coli ED1a 4940 4182 0.85 587200 Variola virus human/India/Ind3/1967 199 174 0.87 588858 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 5369 3995 0.74 589924 Ferroglobus placidus DSM 10642 2463 1816 0.74 590409 Dickeya dadantii Ech586 4148 3611 0.87 590998 Cellulomonas fimi ATCC 484 3761 2856 0.76 591001 Acidaminococcus fermentans DSM 20731 2016 1675 0.83 591020 Shigella flexneri 2002017 4456 3684 0.83 592021 Bacillus anthracis str. A0248 5291 3818 0.72 592022 Bacillus megaterium DSM 319 5100 3949 0.77 592205 Helicobacter pylori B38 1369 1089 0.80 592316 Pantoea sp. At-9b 5760 4920 0.85 593117 Thermococcus gammatolerans EJ3 2159 1558 0.72 593588 Vibrio cholerae MJ-1236 3695 3093 0.84 595494 Tolumonas auensis DSM 9187 3126 2678 0.86 595495 Escherichia coli KO11FL 4637 4050 0.87 595496 Escherichia coli BW2952 4042 3690 0.91 595499 Candidatus Sulcia muelleri SMDSEM 242 230 0.95 595537 Variovorax paradoxus EPS 5937 4716 0.79 598659 Nautilia profundicola AmH 1730 1374 0.79 598745 Giardia intestinalis ATCC 50581 4466 2241 0.50 600809 Blattabacterium sp. (Periplaneta americana) str. BPLAN 581 540 0.93 604354 Thermococcus sibiricus MM 739 2037 1524 0.75 608538 Hydrogenobacter thermophilus TK-6 2039 1572 0.77 610130 Clostridium saccharolyticum WM1 4133 3249 0.79 622759 Zymomonas mobilis subsp. mobilis NCIMB 11163 1885 1553 0.82 632772 Rhodococcus opacus B4 8170 6099 0.75 633147 Olsenella uli DSM 7084 1739 1404 0.81 633148 Thermosphaera aggregans DSM 11486 1387 977 0.70 634176 Aggregatibacter aphrophilus NJ8700 2246 1769 0.79 634452 Acetobacter pasteurianus IFO 3283-01 2906 2212 0.76 634464 Chlamydia trachomatis Sweden2 882 678 0.77 634498 Methanobrevibacter ruminantium M1 2209 1537 0.70 634499 Erwinia pyrifoliae Ep1/96 3619 2960 0.82 634500 Erwinia billingiae Eb661 4915 4184 0.85 634503 Edwardsiella ictaluri 93-146 3725 2852 0.77 634504 Bartonella grahamii as4aup 1709 1318 0.77 637381 Listeria monocytogenes 08-5923 2961 2409 0.81 637382 Yersinia pestis D106004 3642 3244 0.89 637385 Yersinia pestis D182038 3632 3226 0.89 637386 Yersinia pestis Z176003 3546 3152 0.89 637905 Shewanella violacea DSS12 4336 3125 0.72 637909 Streptococcus gallolyticus UCN34 2216 1828 0.82 637910 Citrobacter rodentium ICC168 4792 4029 0.84 638303 Thermocrinis albus DSM 14484 1592 1322 0.83 639283 Starkeya novella DSM 506 4424 3613 0.82 640131 Klebsiella variicola At-22 5056 4492 0.89 640132 Segniliparus rotundus DSM 44985 3001 2017 0.67 640511 Burkholderia sp. CCGE1002 6866 5355 0.78 641892 Candidatus Sulcia muelleri DMIN 226 212 0.94 643680 Saccharomyces cerevisiae EC1118 5983 4329 0.72 644042 Lactobacillus plantarum JDM1 2948 2339 0.79 644223 Komagataella pastoris GS115 5072 4073 0.80 644281 Methanocaldococcus sp. FS406-22 1815 1404 0.77 644282 Desulfarculus baarsii DSM 2075 3270 2552 0.78 644284 Arcanobacterium haemolyticum DSM 20595 1720 1336 0.78 644295 Methanohalobium evestigatum Z-7303 2250 1676 0.74 644440 Infectious bursal disease virus chicken/UK/UK661/1989 3 3 1.00 644639 Duck hepatitis B virus isolate DHBVQCA34 4 4 1.00 644651 Erwinia pyrifoliae DSM 12163 3946 2958 0.75 645098 Measles virus strain Ichinose-B95a 8 8 1.00 645099 Banana bunchy top virus isolate Autralia 7 4 0.57 645118 Infectious bursal disease virus chicken/Cuba/Soroa/1998 3 3 1.00 645127 Corynebacterium kroppenstedtii DSM 44385 2018 1552 0.77 645133 Glomerella graminicola M1.001 12019 7800 0.65 645462 Clostridium difficile CD196 3453 2901 0.84 645463 Clostridium difficile R20291 3505 2932 0.84 647113 Methanothermococcus okinawensis IH1 1583 1286 0.81 647331 Atkinsonella hypoxylon virus isolate 2H 2 0 0.00 647332 Human picobirnavirus strain Hy005102 3 1 0.33 648168 Colorado tick fever virus Florio N-7180 13 0 0.00 648169 Lymantria dispar cypovirus 1 isolate Rao 10 1 0.10 648170 Aedes pseudoscutellaris reovirus isolate France 9 0 0.00 648172 Fiji disease virus isolate Sugarcane 12 5 0.42 648234 American grass carp reovirus PB01-155 12 6 0.50 648235 Murine minute virus strain MVM prototype 7 4 0.57 648238 Human parvovirus B19 isolate AU 4 3 0.75 648242 Adeno-associated virus 2 Srivastava/1982 5 5 1.00 648243 Bovine parvovirus pAT153/1986 3 3 1.00 648250 Junonia coenia densovirus pBRJ/1990 4 2 0.50 648330 Aedes albopictus densovirus Boublik/1994 3 1 0.33 648757 Rhodomicrobium vannielii ATCC 17100 3513 2673 0.76 649596 Micromonas pusilla reovirus (isolate Netherlands) 11 0 0.00 649603 Rice ragged stunt virus (isolate Thailand) 11 1 0.09 649604 Banna virus strain JKT-6423 12 5 0.42 649639 Bacillus cellulosilyticus DSM 2522 4253 3131 0.74 649893 Giardia lamblia virus isolate Wang 2 1 0.50 649895 Broad bean wilt virus 1 ATCC PV132 2 2 1.00 650130 Human rhinovirus 89 ATCC VR-1199 1 1 1.00 650137 Cherry rasp leaf virus isolate potato 2 1 0.50 650150 Erysipelothrix rhusiopathiae str. Fujisawa 1679 1324 0.79 650481 Satsuma dwarf virus S-58 2 2 1.00 650482 Mushroom bacilliform virus LF-1/AUS 4 2 0.50 650488 Pelargonium zonate spot virus isolate tomato 4 3 0.75 650489 Olive latent virus 2 isolate Italy 4 3 0.75 651354 Grapevine leafroll-associated virus 3 isolate NY1 13 5 0.38 651355 Lettuce infectious yellows virus isolate 92 9 7 0.78 651356 Apple stem pitting virus PA66 5 5 1.00 651357 Indian citrus ringspot virus K1 6 6 1.00 651358 Grapevine virus A isolate Is 151 5 3 0.60 652104 Barley yellow mosaic virus isolate Yancheng 2 2 1.00 652105 Sweet potato mild mottle virus isolate Salazar 1 1 1.00 652106 Ryegrass mosaic virus isolate Danish 1 1 1.00 652108 Nudaurelia capensis beta virus isolate South Africa 2 2 1.00 652109 Pothos latent virus isolate pigeonpea 4 2 0.50 652110 Oat chlorotic stunt virus isolate United Kingdom 3 2 0.67 652111 Carnation mottle virus isolate Shanghai 4 3 0.75 652597 Carnation ringspot virus isolate Lommel 4 3 0.75 652599 Panicum mosaic virus strain Kansas 109S 5 3 0.60 652668 Grapevine fleck virus isolate MT48 4 2 0.50 652669 Maize rayado fino virus isolate Costa Rica 2 1 0.50 652670 Beet necrotic yellow vein virus S 9 9 1.00 652673 Soil-borne wheat mosaic virus strain Nebraska 5 5 1.00 652674 Hepatitis E virus isolate Hetian 3 3 1.00 652675 Raspberry bushy dwarf virus isolate R15 3 2 0.67 652837 Peanut clump virus 87/TGTA2 7 6 0.86 652838 Ourmia melon virus VE9 3 0 0.00 652839 Potato mop-top virus Sw 7 6 0.86 652938 Southern bean mosaic virus isolate Arkansas 4 3 0.75 652939 Tobacco rattle virus PpK20 6 4 0.67 652953 Newcastle disease virus B1/48 8 7 0.88 652954 Avian metapneumovirus 15a 9 6 0.67 652961 Crimean-Congo hemorrhagic fever virus strain IbAr10200 3 3 1.00 652962 Lettuce big-vein associated virus isolate Kagawa 6 1 0.17 652963 Citrus ringspot virus isolate P-121 4 2 0.50 652964 Mirafiori lettuce virus LS301-O 7 2 0.29 652965 Infectious salmon anemia virus isolate 810/9/99 10 2 0.20 653733 Desulfurispirillum indicum S5 2551 2040 0.80 653938 Listeria monocytogenes 08-5578 3082 2466 0.80 654901 Alcelaphine herpesvirus 1 strain C500 70 60 0.86 654903 Ostreid herpesvirus 1 (isolate France) 116 19 0.16 654904 Rachiplusia ou MNPV (strain R1) 149 113 0.76 654905 Cydia pomonella granulosis virus (isolate Mexican) 143 78 0.55 654908 Sulfolobus islandicus filamentous virus (isolate Hveragerdi) 73 9 0.12 654909 Acidianus filamentous virus 1 (isolate Yellowstone) 40 7 0.17 654910 Acidianus filamentous virus 2 (isolate Pozzuoli) 52 4 0.08 654911 Acidianus bottle-shaped virus (isolate Pozzuoli) 54 1 0.02 654912 His1 virus (isolate Victoria) 35 2 0.06 654913 Shrimp white spot syndrome virus (isolate Tongan) 531 20 0.04 654915 Mastomys natalensis papillomavirus (isolate African multimammate rat) 6 6 1.00 654919 Microplitis demolitor bracovirus (isolate Webb) 53 30 0.57 654922 Lymphocystis disease virus 1 (isolate Darai) 1 1 1.00 654924 Frog virus 3 (isolate Goorha) 98 31 0.32 654929 Porcine circovirus 1 (isolate China) 2 2 1.00 654931 Drosophila x virus (isolate Chung) 3 2 0.67 654932 Penicillium chrysogenum virus (isolate Caston) 4 1 0.25 654934 White clover cryptic virus 1 (isolate Boccardo) 2 1 0.50 655816 Bacillus subtilis subsp. spizizenii str. W23 4057 3252 0.80 655827 Metarhizium acridum CQMa 102 9830 6832 0.70 655844 Metarhizium anisopliae ARSEF 23 10581 7454 0.70 655863 Grosmannia clavigera kw1407 8311 5861 0.71 656061 Tuber melanosporum Mel28 7494 4901 0.65 658858 Giardia lamblia P15 4998 2546 0.51 660122 Nectria haematococca mpVI 77-13-4 15680 10620 0.68 661367 Legionella longbeachae NSW150 3460 2307 0.67 661410 Methylobacterium extorquens DM4 5715 3929 0.69 663202 Trichophyton verrucosum HKI 0517 8028 5175 0.64 663331 Arthroderma benhamiae CBS 112371 7978 5202 0.65 663917 Geobacter sulfurreducens KN400 3313 2648 0.80 663951 Staphylococcus aureus subsp. aureus TW20 2764 2203 0.80 665029 Erwinia amylovora CFBP1430 3733 2845 0.76 665079 Sclerotinia sclerotiorum 1980 UF-70 14401 6665 0.46 665571 Spirochaeta thermophila DSM 6192 2199 1739 0.79 666510 Acidilobus saccharovorans 345-15 1499 1096 0.73 668336 Aggregatibacter actinomycetemcomitans D11S-1 2211 1753 0.79 670426 Psittacid herpesvirus 1 Amazon parrot/1997 71 56 0.79 672161 Chlamydia trachomatis B/TZ1A828/OT 888 681 0.77 673322 Measles virus strain Shanghai-191 vaccine 1 1 1.00 679716 Trypanosoma brucei gambiense DAL972 9668 3932 0.41 679896 Corynebacterium pseudotuberculosis 1002 2090 1572 0.75 679901 Methanosalsum zhilinae DSM 4017 1972 1576 0.80 679926 Methanoplanus petrolearius DSM 11571 2779 1953 0.70 680198 Streptomyces scabiei 87.22 8700 6064 0.70 680646 Rothia mucilaginosa DY-18 1991 1267 0.64 681288 Staphylococcus aureus subsp. aureus ED98 2683 2142 0.80 681645 Corynebacterium pseudotuberculosis C231 2090 1560 0.75 683837 Listeria seeligeri serovar 1/2b str. SLCC3954 2710 2237 0.83 684364 Batrachochytrium dendrobatidis JAM81 8610 5261 0.61 684738 Lactococcus lactis subsp. lactis KF147 2458 1939 0.79 684950 Helicobacter pylori 52 1403 1113 0.79 685038 Escherichia coli O83:H1 str. NRG 857C 4575 4015 0.88 685727 Rhodococcus equi 103S 4576 3562 0.78 686943 Poinsettia latent virus isolate Germany/Siepen 4 4 1.00 686945 Lolium latent virus USA/US1 6 5 0.83 686946 Botrytis virus F NZL/Howitt 2 2 1.00 686947 Botrytis virus X NZL/Howitt 5 2 0.40 686948 Tomato torrado virus ESP/PRIToTV0301 3 2 0.67 686949 Blackberry virus Y USA/C3ARK 1 1 1.00 686950 Citrus leprosis virus C BRA/Cordeiropolis 6 2 0.33 686981 Citrus leaf blotch virus FRA/SRA-153 3 3 1.00 686987 Sclerotinia sclerotiorum debilitation-associated virus CHN/Xie 1 1 1.00 692420 Bacillus amyloliquefaciens DSM 7 3902 3140 0.80 693216 Cronobacter turicensis z3032 4466 3650 0.82 693977 Deinococcus proteolyticus MRP 2652 1905 0.72 693979 Bacteroides helcogenes P 36-108 3241 2313 0.71 693989 Pea enation mosaic virus-1 strain WSG 5 4 0.80 694006 Rousettus bat coronavirus HKU9 9 6 0.67 694007 Tylonycteris bat coronavirus HKU4 18 15 0.83 694008 Pipistrellus bat coronavirus HKU5 18 14 0.78 694067 Human metapneumovirus CAN97-83 9 7 0.78 696863 Spring viraemia of carp virus 178 151 0.85 697329 Ruminococcus albus 7 3776 2311 0.61 698737 Staphylococcus lugdunensis HKU09-01 2456 2016 0.82 701177 Escherichia coli O55:H7 str. CB9615 5085 4323 0.85 701347 Enterobacter cloacae SCF1 4393 3930 0.89 703339 Staphylococcus aureus 04-02981 2639 2172 0.82 706191 Pantoea ananatis LMG 20103 4242 3690 0.87 710127 Mycoplasma gallisepticum str. R(low) 761 548 0.72 710128 Mycoplasma gallisepticum str. R(high) 763 548 0.72 710696 Intrasporangium calvum DSM 43043 3551 2770 0.78 712898 Pantoea vagans C9-1 4590 3798 0.83 712938 Lactobacillus fermentum CECT 5716 1043 939 0.90 712961 Lactobacillus salivarius CECT 5713 1533 1323 0.86 714962 Escherichia coli IHE3034 4748 4061 0.86 715451 Alteromonas sp. SN2 4343 3238 0.75 716540 Erwinia amylovora ATCC 49946 3563 2888 0.81 716541 Enterobacter cloacae subsp. cloacae ATCC 13047 5411 4371 0.81 717773 Thioalkalimicrobium cyclicum ALM1 1664 1426 0.86 717774 Marinomonas mediterranea MMB-1 4118 3336 0.81 718219 Chlamydia trachomatis G/9301 921 675 0.73 718251 Edwardsiella tarda FL6-60 3251 2839 0.87 720555 Bacillus atrophaeus 1942 4186 3204 0.77 721032 Saccharomyces cerevisiae Kyokai no. 7 5776 4598 0.80 722438 Mycoplasma pneumoniae FH 629 481 0.76 741091 Rahnella sp. Y9602 5099 4349 0.85 743525 Thermus scotoductus SA-01 2448 1885 0.77 743720 Pseudomonas fulva 12-X 4459 3739 0.84 746361 Lactococcus lactis subsp. cremoris NZ9000 2446 1886 0.77 748671 Lactobacillus crispatus ST1 2003 1552 0.77 749219 Moraxella catarrhalis RH4 1881 1354 0.72 749414 Streptomyces bingchenggensis BCW-1 10019 7082 0.71 749927 Amycolatopsis mediterranei U32 9204 6756 0.73 754252 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 2310 1757 0.76 756982 Arthrobotrys oligospora ATCC 24927 11478 6413 0.56 757424 Herbaspirillum seropedicae SmR1 4732 3906 0.83 761659 Salinibacter ruber M8 3247 2225 0.69 762051 Leuconostoc kimchii IMSNU 11154 2128 1670 0.78 762376 Achromobacter xylosoxidans A8 6798 5607 0.82 762550 Leuconostoc gasicomitatum LMG 18811 1902 1498 0.79 764097 Saccharomyces cerevisiae AWRI796 3760 2947 0.78 764098 Saccharomyces cerevisiae Lalvin QA23 4008 3142 0.78 764099 Saccharomyces cerevisiae Vin13 3916 3054 0.78 764100 Saccharomyces cerevisiae VL3 4014 3148 0.78 764101 Saccharomyces cerevisiae FostersO 3560 2706 0.76 764102 Saccharomyces cerevisiae FostersB 3679 2855 0.78 765874 Corynebacterium pseudotuberculosis FRC41 2110 1623 0.77 766178 Ictalurid herpesvirus 1 (strain Auburn) 76 11 0.14 766180 White bream virus (strain DF24/00) 5 2 0.40 766182 Torque teno virus 1 (isolate TA278) 2 2 1.00 766183 Torque teno mini virus 1 (isolate TLMV-CBD279) 3 3 1.00 766184 Torque teno midi virus 1 (isolate MD1-073) 2 2 1.00 766185 Torque teno tupaia virus (isolate Tbc-TTV14) 3 2 0.67 766186 Torque teno tamarin virus (isolate So-TTV2) 4 1 0.25 766187 Torque teno douroucouli virus (isolate At-TTV3) 3 2 0.67 766188 Torque teno felis virus-Fc-TTV4 3 1 0.33 766189 Torque teno canis virus (isolate Cf-TTV10) 3 1 0.33 766190 Torque teno sus virus 1 (isolate Sd-TTV31) 3 1 0.33 766191 Cryptosporidium parvum virus 1 (strain KSU-1) 2 1 0.50 766192 Canine oral papillomavirus (strain Y62) 7 6 0.86 766194 Dugbe virus (isolate ArD44313) 3 3 1.00 768065 Haloquadratum walsbyi C23 2729 1792 0.66 768066 Halomonas elongata DSM 2581 3471 3039 0.88 768670 Calditerrivibrio nitroreducens DSM 19672 2089 1760 0.84 771870 Sordaria macrospora k-hell 9891 6186 0.63 795797 Halalkalicoccus jeotgali B3 3779 2398 0.63 796210 La Crosse virus L78 4 4 1.00 857087 Methylomonas methanica MC09 4435 3246 0.73 857306 PRRSV SD 01-08 8 8 1.00 861557 Pyrenophora teres f. teres 0-1 11705 7083 0.61 862908 Bacteriovorax marinus SJ 3229 2053 0.64 862962 Bacteroides fragilis 638R 4284 2957 0.69 862965 Haemophilus parainfluenzae T3T1 1973 1704 0.86 866775 Aerococcus urinae ACS-120-V-Col10a 1684 1420 0.84 868131 Methanobacterium sp. SWAN-1 2394 1747 0.73 868132 Methanobacterium sp. AL-21 2493 1833 0.74 868565 Human herpesvirus 8 strain GK18 86 74 0.86 871271 Candidatus Zinderia insecticola CARI 206 195 0.95 871575 Ogataea parapolymorpha DL-1 4171 3535 0.85 871585 Acinetobacter calcoaceticus PHEA-2 3598 2841 0.79 876142 Encephalitozoon intestinalis ATCC 50506 1829 1213 0.66 880591 Ketogulonicigenium vulgare Y25 3209 2559 0.80 880724 Methanotorris igneus Kol 5 1753 1437 0.82 882210 Maize chlorotic mottle virus Kansas/1987 4 2 0.50 887061 Methylovorus sp. MP688 2709 2178 0.80 903503 Candidatus Moranella endobia PCIT 405 399 0.99 909420 Neisseria meningitidis H44/76 2946 1935 0.66 909946 Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 4826 4069 0.84 914672 Nodamura virus Mag115 3 2 0.67 926569 Anaerolinea thermophila UNI-1 3110 2370 0.76 926570 Acidiphilium multivorum AIU301 3858 3081 0.80 927666 Streptococcus oralis Uo5 1907 1524 0.80 928296 Borna disease virus strain V 5 4 0.80 928297 Bovine ephemeral fever virus strain BB7721 12 5 0.42 928299 Cowpea mosaic virus strain SB 5 4 0.80 928300 Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968 2 2 1.00 928301 Fowlpox virus strain NVSL 251 182 0.73 928302 Hepatitis B virus C/ayr human/Japan/Okamoto 5 5 1.00 928303 Hendra virus horse/Australia/Hendra/1994 9 7 0.78 928304 Lettuce necrotic yellows virus isolate 318 6 2 0.33 928305 Maize mosaic virus maize/USA/Reed/2005 6 1 0.17 928306 Moloney murine leukemia virus isolate Shinnick 3 3 1.00 928313 Tacaribe virus strain Franze-Fernandez 4 4 1.00 928314 Yaba monkey tumor virus strain VR587 140 125 0.89 930944 Yersinia enterocolitica subsp. palearctica Y11 4391 3573 0.81 932677 Pantoea ananatis AJ13355 4060 3646 0.90 936153 Enterococcus faecalis 62 3010 2310 0.77 936155 Helicobacter felis ATCC 49179 1649 1185 0.72 936156 Bacillus subtilis BSn5 4145 3299 0.80 937773 Staphylococcus pseudintermedius HKU10-03 2449 1980 0.81 937774 Taylorella equigenitalis MCE9 1556 1301 0.84 940190 Melissococcus plutonius ATCC 35311 1876 1449 0.77 953739 Streptomyces venezuelae ATCC 10712 7451 5274 0.71 979556 Microbacterium testaceum StLB037 3671 2738 0.75 984892 Staphylococcus pseudintermedius ED99 2346 1921 0.82 985053 Vulcanisaeta moutnovskia 768-28 2318 1535 0.66 985895 Leptosphaeria maculans JN3 12468 6291 0.50 990316 Methanosaeta concilii GP6 2791 1993 0.71 994484 Pseudomonas brassicacearum subsp. brassicacearum NFM421 6081 4881 0.80 998820 Lactobacillus casei BD-II 3166 2243 0.71 999378 Lactobacillus casei LC2W 3119 2211 0.71 999809 Sporisorium reilianum SRZ2 6673 4839 0.73 999953 Trypanosoma brucei brucei strain 927/4 GUTat10.1 8774 4117 0.47 1002809 Solibacillus silvestris StLB046 3812 2935 0.77 1005059 Cocksfoot mottle virus Dactylis glomerata/Norway/CfMV-NO/1995 4 3 0.75 1005060 Groundnut rosette virus MC1 3 3 1.00 1016998 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 5559 3857 0.69 1017264 Bordetella pertussis CS 3274 2924 0.89 1028307 Enterobacter aerogenes KCTC 2190 4909 4224 0.86 1033837 Lactobacillus kefiranofaciens ZW3 2134 1514 0.71 1045854 Weissella koreensis KACC 15510 1346 1102 0.82 1046629 Streptococcus salivarius 57.I 1933 1590 0.82 1048332 Streptococcus salivarius CCHSS3 1999 1636 0.82 1051072 Streptococcus equi subsp. zooepidemicus ATCC 35246 2063 1549 0.75 1064592 Naumovozyma castellii CBS 4309 5565 4412 0.79 1077587 Influenza B virus (B/Victoria/2/1987) 15 15 1.00 1111708 Synechocystis sp. PCC 6803 substr. Kazusa 3507 2637 0.75